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NC_047931.1__YP_009798677.1__HOS85_gp007__00007

Bact-Vir

NC_047931.1__YP_009798677.1__HOS85_gp007__00007

Identity

Accession:
NC_047931 ↗
Kingdom:
phage

Quality

95.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Maenadvirus› Lactobacillus_phage_Maenad

TaxID: 2079431

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.06e-01 100.0% 67.9%
1n40A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 44.0 2.81e-01 96.8% 65.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 32.0 3.30e-01 81.0% 60.0%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.08e-01 100.0% 71.8%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.16e-01 100.0% 70.8%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.54 46.0 3.68e-01 100.0% 48.0%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 35.0 3.34e-01 87.3% 55.3%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 3.95e-01 100.0% 69.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.91e-01 100.0% 65.1%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.63e-01 100.0% 75.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 33.0 3.35e-01 100.0% 68.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3499280 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 49.0 3.66e-01 100.0% 54.6%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.56 42.0 2.53e-01 88.9% 11.1%
3259130 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 4.17e-01 100.0% 74.0%
3385696 854.1.1.0 ↗ extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE 0.54 40.0 3.74e-01 96.8% 63.3%
4954114 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.54 38.0 3.94e-01 87.3% 81.7%
3506704 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 47.0 3.90e-01 100.0% 64.3%
3703312 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 35.0 2.25e-01 73.0% 77.5%
4488509 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 45.0 3.43e-01 100.0% 48.7%
3661869 320.1.1.12 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › RRM_NFXL1 0.50 37.0 2.70e-01 79.4% 47.0%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 36.0 3.46e-01 81.0% 66.2%