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NC_047931.1__YP_009798704.1__HOS85_gp034__00034

Bact-Vir

Identity

Accession:: NC_047931 ↗
Kingdom:: phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Maenadvirus› Lactobacillus_phage_Maenad

TaxID: 2079431

Cluster

View cluster (3 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-33_98-126

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ultB01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.59	49.0	3.00e-01	96.8%	63.3%
2d8bA01	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.53	38.0	3.03e-01	77.4%	84.3%
4obmA00	3.40.630.190	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein	0.53	39.0	2.59e-01	79.0%	69.8%
2k47A00	1.10.8.440	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Vesicular stomatitis virus phosphoprotein C-terminal domain	0.52	36.0	3.45e-01	72.6%	98.6%
3pqvC01	3.65.10.20	Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain	0.52	37.0	2.48e-01	77.4%	55.3%
4nnaA01	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.51	38.0	2.43e-01	100.0%	15.2%
4lvnP00	3.30.70.2380	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	40.0	3.71e-01	87.1%	84.0%
3h4rA00	3.90.320.10	Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A ›	0.51	42.0	3.01e-01	100.0%	57.5%
3puaA01	2.60.120.650	Mainly Beta › Sandwich › Jelly Rolls › Cupin	0.50	41.0	2.80e-01	98.4%	74.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5022231	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.58	40.0	3.20e-01	72.6%	74.4%
3929996	10.12.1.97 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C	0.53	38.0	2.80e-01	75.8%	78.3%
3994540	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.53	45.0	2.93e-01	100.0%	67.7%
1144695	268.2.1.0 ↗	a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes	0.53	39.0	2.59e-01	79.0%	69.8%
4982829	2484.1.1.2 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin	0.51	37.0	2.47e-01	77.4%	49.8%
3250585	109.4.1.791 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17	0.51	37.0	2.17e-01	77.4%	14.3%
3206242	6166.1.1.1 ↗	alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24	0.51	36.0	2.62e-01	80.6%	81.8%
3625486	384.1.1.1 ↗	few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI	0.51	35.0	3.16e-01	90.3%	50.0%
3496197	2002.4.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like	0.50	36.0	2.40e-01	77.4%	29.2%
3783976	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.50	31.0	2.75e-01	79.0%	42.2%

D2 medium residues 34-97

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hiuD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.66	45.0	3.41e-01	70.3%	46.7%