←Back to structures

NC_047931.1__YP_009798712.1__HOS85_gp042__00042

Bact-Vir

NC_047931.1__YP_009798712.1__HOS85_gp042__00042

Identity

Accession:
NC_047931 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Maenadvirus› Lactobacillus_phage_Maenad

TaxID: 2079431

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-77
PDB
Domain cluster: rep: MK075002.1__AZB66573.1__X__00030__D29-84
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11753.14 best DUF3310 33.5 5.00e-08 85.0% 78.3%
D2 high residues 85-164
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 46.0 4.19e-01 78.8% 46.2%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.67 50.0 5.25e-01 88.7% 86.1%
1vkzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 47.0 4.94e-01 100.0% 98.6%
2x65A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 47.0 3.22e-01 90.0% 70.7%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 48.0 4.61e-01 100.0% 79.6%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 46.0 4.15e-01 100.0% 64.0%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 47.0 4.37e-01 100.0% 70.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 50.0 3.83e-01 100.0% 51.1%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 42.0 2.94e-01 81.2% 34.5%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 4.19e-01 100.0% 66.4%
1o4tA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 4.14e-01 100.0% 64.3%
5bpxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 45.0 3.68e-01 100.0% 47.1%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 4.24e-01 100.0% 72.5%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 3.66e-01 100.0% 46.8%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 40.0 3.06e-01 78.8% 40.7%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 43.0 3.03e-01 91.3% 80.1%
5k6wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.14e-01 100.0% 79.1%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 47.0 4.14e-01 100.0% 66.1%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 45.0 4.13e-01 100.0% 70.6%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.53 44.0 3.95e-01 90.0% 68.8%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.68e-01 100.0% 52.4%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.53 47.0 4.36e-01 100.0% 98.1%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 42.0 3.99e-01 100.0% 73.7%
1nunA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 45.0 3.80e-01 100.0% 99.3%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.51 42.0 4.40e-01 100.0% 97.3%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 39.0 2.87e-01 86.3% 93.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937906 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.66 48.0 3.71e-01 100.0% 34.1%
3410798 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.65 45.0 3.73e-01 72.5% 93.1%
5061842 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.65 44.0 3.41e-01 100.0% 32.0%
4561925 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.64 47.0 4.31e-01 80.0% 100.0%
5024709 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.60 47.0 3.47e-01 100.0% 31.1%
5027371 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 45.0 3.50e-01 100.0% 36.7%
4147794 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.59 39.0 3.88e-01 100.0% 64.7%
5051145 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 45.0 4.14e-01 100.0% 63.6%
3401943 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.57 48.0 3.35e-01 100.0% 40.6%
7384 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.57 50.0 3.83e-01 100.0% 51.1%
3284076 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.57 46.0 3.71e-01 100.0% 44.2%
3607994 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.56 50.0 3.50e-01 100.0% 40.0%
4945534 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.56 48.0 4.15e-01 100.0% 97.8%
4264620 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.56 46.0 4.06e-01 100.0% 61.7%
3848859 11.1.1.850 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 0.55 45.0 4.22e-01 100.0% 72.0%
3605089 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.55 38.0 4.19e-01 80.0% 96.7%
3544841 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.55 46.0 3.89e-01 100.0% 55.6%
1165706 219.1.1.57 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CIF 0.54 44.0 3.54e-01 93.8% 82.4%
4082091 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.54 46.0 4.17e-01 100.0% 89.6%
3815174 10.32.1.231 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_M 0.54 48.0 4.27e-01 100.0% 95.7%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 47.0 4.08e-01 100.0% 75.4%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.54 47.0 4.07e-01 100.0% 75.4%
3990696 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 40.0 3.01e-01 80.0% 38.5%
4517543 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 47.0 4.11e-01 100.0% 78.4%
4932882 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 47.0 4.00e-01 100.0% 73.3%
4028378 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 47.0 4.04e-01 100.0% 75.4%
3860802 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 46.0 3.88e-01 100.0% 57.0%
3249352 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 47.0 4.02e-01 100.0% 75.4%
1347546 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 46.0 3.69e-01 100.0% 52.7%
3223650 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.53 38.0 3.25e-01 78.8% 66.2%
3639466 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 46.0 3.85e-01 100.0% 67.6%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 46.0 4.10e-01 100.0% 78.3%
3624709 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.52 42.0 3.63e-01 90.0% 89.2%
3265780 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.52 35.0 3.81e-01 80.0% 93.3%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.51 44.0 4.32e-01 98.8% 91.8%
3478975 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 42.0 3.55e-01 90.0% 90.4%
4956454 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.51 32.0 3.75e-01 70.0% 92.7%
4478289 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 43.0 3.73e-01 100.0% 60.0%
4954224 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.51 44.0 4.21e-01 98.8% 89.5%
3901659 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 45.0 4.03e-01 100.0% 80.9%
3856901 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 43.0 2.92e-01 100.0% 30.0%
5039219 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 39.0 3.42e-01 85.0% 68.8%
3604609 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 43.0 3.87e-01 100.0% 95.8%