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NC_047931.1__YP_009798756.1__HOS85_gp086__00086
Bact-VirNC_047931.1__YP_009798756.1__HOS85_gp086__00086
Identity
- Accession:
- NC_047931 ↗
- Kingdom:
- phage
Quality
51.4
mean pLDDT
Taxonomy
TaxID: 2079431
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-128
D2
medium
residues 129-253
D3
medium
residues 254-341
D4
medium
residues 367-430
D5
medium
residues 431-532
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 67.8 | 1.80e-18 | 100.0% | 47.8% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lzjA02 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 37.0 | 4.17e-01 | 88.2% | 70.9% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 45.0 | 4.82e-01 | 76.5% | 90.6% |
| 3c4aA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 49.0 | 3.95e-01 | 89.2% | 95.4% |
| 5xjnA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 49.0 | 3.26e-01 | 89.2% | 46.7% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.58 | 49.0 | 3.68e-01 | 95.1% | 85.2% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.55 | 45.0 | 4.42e-01 | 88.2% | 96.4% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.55 | 38.0 | 3.49e-01 | 73.5% | 83.9% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 43.0 | 4.36e-01 | 86.3% | 87.0% |
| 7e4mA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 44.0 | 3.36e-01 | 91.2% | 66.9% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 45.0 | 4.42e-01 | 91.2% | 96.5% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 41.0 | 4.06e-01 | 84.3% | 95.5% |
| 1b0uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.13e-01 | 86.3% | 37.6% |
| 4kk2B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 44.0 | 3.10e-01 | 93.1% | 79.2% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 41.0 | 3.97e-01 | 84.3% | 87.0% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 43.0 | 3.87e-01 | 90.2% | 87.4% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 42.0 | 3.86e-01 | 89.2% | 86.4% |
| 4iu9B01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 44.0 | 3.44e-01 | 96.1% | 76.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.96 | 78.0 | 5.91e-01 | 91.2% | 41.0% |
| 3963765 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.71 | 64.0 | 5.24e-01 | 100.0% | 75.3% |
| 3277203 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 55.0 | 4.77e-01 | 86.3% | 86.5% |
| 3284826 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.64 | 55.0 | 4.33e-01 | 95.1% | 95.5% |
| 3734078 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 39.0 | 3.02e-01 | 70.6% | 43.0% |
| 3255346 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.55 | 45.0 | 4.17e-01 | 89.2% | 88.5% |
| 5083545 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 43.0 | 3.19e-01 | 85.3% | 37.0% |
| 3737512 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.54 | 45.0 | 3.99e-01 | 92.2% | 73.3% |
| 3996243 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.54 | 44.0 | 3.43e-01 | 90.2% | 69.6% |
| 3773789 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 45.0 | 3.95e-01 | 92.2% | 73.3% |
| 5026768 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 47.0 | 4.61e-01 | 97.1% | 100.0% |
| 3652068 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 44.0 | 3.99e-01 | 90.2% | 84.1% |
| 3708822 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 44.0 | 4.00e-01 | 91.2% | 77.9% |
| 3923539 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 44.0 | 3.99e-01 | 92.2% | 78.6% |
| 3724015 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.52 | 44.0 | 3.97e-01 | 92.2% | 77.9% |
| 3660568 | 101.1.10.21 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C | 0.51 | 45.0 | 3.41e-01 | 99.0% | 96.2% |
| 5014154 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.51 | 45.0 | 3.75e-01 | 100.0% | 87.9% |
| 3602521 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.51 | 37.0 | 3.24e-01 | 76.5% | 86.9% |
| 3526937 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 43.0 | 3.92e-01 | 93.1% | 88.6% |
| 3953529 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.51 | 40.0 | 2.69e-01 | 85.3% | 69.2% |
| 3622936 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.50 | 36.0 | 3.15e-01 | 75.5% | 80.6% |
| 3507767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.50 | 40.0 | 4.19e-01 | 90.2% | 94.7% |
D6
medium
residues 1103-1158
D7
medium
residues 1180-1248
D8
medium
residues 1372-1425
D9
medium
residues 1456-1532
D10
medium
residues 1621-1773
Domain cluster:
rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18013.7 best | Phage_lysozyme2 | 93.8 | 1.50e-26 | 88.2% | 87.6% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.69 | 59.0 | 5.57e-01 | 90.8% | 100.0% |
| 1qsaA03 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.67 | 58.0 | 5.56e-01 | 92.2% | 91.9% |
| 6cfcA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.67 | 55.0 | 5.43e-01 | 86.9% | 93.8% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.64 | 54.0 | 5.14e-01 | 90.8% | 95.1% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.64 | 54.0 | 5.42e-01 | 90.2% | 93.7% |
| 3fm9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 32.0 | 4.36e-01 | 81.0% | 94.9% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 30.0 | 4.05e-01 | 79.7% | 97.2% |
| 1am7A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.60 | 54.0 | 5.42e-01 | 96.1% | 98.7% |
| 3wfwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 29.0 | 3.12e-01 | 94.8% | 52.9% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.54 | 31.0 | 3.88e-01 | 88.9% | 96.5% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 29.0 | 3.69e-01 | 98.7% | 92.0% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.53 | 24.0 | 3.09e-01 | 96.7% | 71.9% |
| 2rp5A00 | 1.10.150.830 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 31.0 | 3.50e-01 | 94.1% | 75.2% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.51 | 27.0 | 3.31e-01 | 73.2% | 84.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279121 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.78 | 47.0 | 5.95e-01 | 80.4% | 98.9% |
| 3260862 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.75 | 52.0 | 6.09e-01 | 92.8% | 100.0% |
| 3254511 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.74 | 50.0 | 5.91e-01 | 88.9% | 100.0% |
| 1175858 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.69 | 60.0 | 5.58e-01 | 92.2% | 98.4% |
| 3979308 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.67 | 57.0 | 5.48e-01 | 90.8% | 97.7% |
| 3941811 | 235.1.1.32 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 | 0.67 | 58.0 | 5.58e-01 | 90.8% | 91.8% |
| 3645913 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 30.0 | 3.39e-01 | 85.6% | 70.0% |