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NC_047933.1__YP_009799003.1__HOS87_gp23__00023

Bact-Vir

NC_047933.1__YP_009799003.1__HOS87_gp23__00023

Identity

Accession:
NC_047933 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Kirikabuvirus› Pseudomonas_phage_phiNV3

TaxID: 2079544

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 352-402
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 4.56e-01 78.4% 66.3%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 54.0 5.22e-01 84.3% 75.4%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.69 53.0 3.54e-01 82.4% 77.1%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 46.0 2.74e-01 84.3% 8.7%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.68 50.0 3.57e-01 80.4% 39.2%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 50.0 4.47e-01 82.4% 56.8%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.64 44.0 4.14e-01 84.3% 57.6%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 43.0 3.30e-01 84.3% 30.3%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.62 45.0 3.31e-01 80.4% 60.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 4.03e-01 88.2% 60.7%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 41.0 3.72e-01 70.6% 52.7%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 46.0 3.73e-01 88.2% 61.3%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 3.05e-01 72.5% 35.2%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.46e-01 84.3% 42.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 2.64e-01 84.3% 27.3%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 2.96e-01 88.2% 22.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.32e-01 82.4% 79.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 3.96e-01 80.4% 64.6%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 42.0 3.58e-01 82.4% 65.2%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 2.96e-01 90.2% 44.7%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.57e-01 84.3% 26.7%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.56 43.0 3.23e-01 88.2% 31.5%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 39.0 2.45e-01 72.5% 17.6%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 47.0 2.99e-01 96.1% 32.1%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 38.0 2.83e-01 74.5% 34.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.82e-01 82.4% 90.5%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 42.0 3.26e-01 88.2% 40.3%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.02e-01 96.1% 36.7%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 2.94e-01 96.1% 27.3%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.55 44.0 2.81e-01 92.2% 57.4%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 3.32e-01 78.4% 53.2%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 40.0 3.97e-01 88.2% 91.1%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 40.0 3.30e-01 82.4% 82.0%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.40e-01 74.5% 66.7%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.54 43.0 3.17e-01 96.1% 54.0%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 45.0 2.86e-01 96.1% 30.4%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.26e-01 80.4% 60.8%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.54 40.0 3.24e-01 86.3% 54.7%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 3.62e-01 80.4% 70.4%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.57e-01 94.1% 47.9%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.54 40.0 3.43e-01 94.1% 45.6%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 39.0 3.25e-01 82.4% 82.0%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.53 39.0 3.02e-01 88.2% 67.1%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 39.0 3.29e-01 80.4% 50.5%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 2.98e-01 96.1% 44.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.54e-01 82.4% 90.9%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.35e-01 72.5% 10.0%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 2.77e-01 94.1% 59.0%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.06e-01 82.4% 73.2%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.89e-01 90.2% 50.6%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.68e-01 90.2% 54.1%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 3.03e-01 84.3% 47.9%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 2.83e-01 84.3% 28.5%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 2.87e-01 82.4% 48.8%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.53e-01 86.3% 77.9%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 37.0 2.95e-01 84.3% 47.9%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 34.0 2.82e-01 74.5% 35.1%
2qa1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 38.0 2.50e-01 92.2% 39.3%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927803 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 64.0 6.46e-01 78.4% 80.0%
5030452 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 64.0 6.82e-01 80.4% 91.1%
3924524 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 52.0 4.72e-01 74.5% 61.4%
4927858 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 56.0 5.47e-01 80.4% 74.5%
3303020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.79e-01 82.4% 84.0%
3317787 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 56.0 5.66e-01 82.4% 84.0%
3319421 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 55.0 5.63e-01 82.4% 84.0%
3702281 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.71 55.0 5.43e-01 84.3% 85.5%
3606500 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.71 56.0 5.33e-01 86.3% 85.0%
4948812 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.70 47.0 2.80e-01 84.3% 8.9%
4961814 375.1.1.341 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7568 0.70 51.0 5.60e-01 80.4% 100.0%
3938027 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.69 48.0 3.55e-01 74.5% 71.1%
4497830 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.69 47.0 3.11e-01 84.3% 18.5%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.68 51.0 3.18e-01 84.3% 14.2%
4958447 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.68 47.0 3.30e-01 86.3% 22.4%
4636455 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.67 52.0 5.52e-01 84.3% 95.6%
3969301 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.67 45.0 3.41e-01 84.3% 27.7%
5035761 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 46.0 3.06e-01 86.3% 17.2%
5061853 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.66 45.0 3.41e-01 84.3% 30.0%
4194025 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.65 44.0 3.32e-01 84.3% 27.7%
4964575 375.1.1.346 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7838 0.64 45.0 4.87e-01 76.5% 97.5%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 49.0 4.70e-01 84.3% 73.3%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.27e-01 82.4% 67.3%
4317888 2003.1.2.147 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_3 0.63 46.0 3.52e-01 80.4% 66.4%
5010183 5.1.3.278 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29948 0.62 45.0 2.74e-01 76.5% 16.1%
4587696 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.62 44.0 3.55e-01 74.5% 74.0%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 46.0 4.22e-01 84.3% 84.3%
4436471 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 44.0 3.50e-01 76.5% 76.2%
3509606 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 44.0 3.02e-01 78.4% 31.3%
4325086 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.60 43.0 3.47e-01 76.5% 76.7%
5060010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.87e-01 90.2% 97.8%
5017342 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 43.0 3.15e-01 74.5% 54.8%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.60 44.0 3.95e-01 80.4% 58.7%
5071787 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 43.0 3.33e-01 80.4% 100.0%
3163776 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 44.0 3.35e-01 80.4% 73.8%
4998404 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.61e-01 92.2% 100.0%
4426764 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.59 42.0 3.40e-01 76.5% 76.7%
5040072 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 45.0 3.10e-01 84.3% 23.7%
3062973 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.59 42.0 2.64e-01 80.4% 31.4%
4058509 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 40.0 3.06e-01 86.3% 28.5%
4031833 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 41.0 3.97e-01 90.2% 65.0%
4497599 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.58 44.0 3.52e-01 80.4% 77.1%
4329624 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.58 41.0 3.28e-01 86.3% 35.2%
None — 0.57 46.0 2.68e-01 88.2% 45.2%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.67e-01 82.4% 56.9%
4675886 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.57 46.0 2.65e-01 88.2% 44.8%
4209421 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.57 46.0 2.86e-01 90.2% 25.2%
3697881 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.57 46.0 2.72e-01 90.2% 36.4%
3205488 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 44.0 2.85e-01 86.3% 39.1%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.56 42.0 3.89e-01 86.3% 63.1%
5078994 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.56 47.0 2.85e-01 94.1% 51.5%
3415181 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.56 46.0 2.85e-01 90.2% 24.9%
4187163 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.56 42.0 3.33e-01 80.4% 75.7%
5061114 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 45.0 2.81e-01 96.1% 56.3%
1075289 2.4.1.5 ↗ beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.56 39.0 3.68e-01 86.3% 57.8%
4873705 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.56 43.0 3.23e-01 84.3% 90.0%
1688900 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.56 43.0 3.02e-01 84.3% 60.9%
3482014 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.55 45.0 2.96e-01 100.0% 33.7%
5040249 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 43.0 2.65e-01 96.1% 49.6%
4192943 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.54 42.0 3.19e-01 84.3% 48.8%
4285199 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 39.0 3.33e-01 80.4% 68.4%
4985279 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 41.0 3.63e-01 86.3% 56.2%
4311788 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.54 40.0 3.20e-01 80.4% 75.7%
4966044 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 42.0 2.59e-01 92.2% 50.8%
5033664 2003.1.3.10 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_oxidored 0.54 43.0 2.89e-01 98.0% 93.6%
3787213 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 41.0 3.26e-01 88.2% 52.2%
4051997 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.54 38.0 3.09e-01 82.4% 71.7%
4978224 2003.1.2.38 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl 0.53 42.0 2.58e-01 94.1% 49.9%
None — 0.53 42.0 2.57e-01 98.0% 51.9%
5004174 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.53 39.0 3.06e-01 84.3% 40.0%
4287237 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.53 40.0 3.08e-01 84.3% 52.0%
4324652 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.52 39.0 2.64e-01 84.3% 26.7%
327025 6048.1.1.1 ↗ a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.52 40.0 3.35e-01 94.1% 44.3%
3222987 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.52 40.0 2.61e-01 92.2% 23.8%
None — 0.52 42.0 2.60e-01 98.0% 51.8%
3238722 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.52 41.0 2.63e-01 96.1% 36.0%
1563361 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.51 40.0 2.55e-01 90.2% 67.3%
5062588 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.37e-01 86.3% 53.7%
3281562 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.51 36.0 2.89e-01 80.4% 68.5%
3508531 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.51 34.0 3.43e-01 84.3% 70.0%
D2 medium residues 3-131
PDB
D3 medium residues 144-221
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 35.0 3.38e-01 91.0% 43.3%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 43.0 2.83e-01 92.3% 16.4%
5f1cA02 2.60.490.10 Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain 0.62 49.0 3.45e-01 91.0% 99.6%
2gu1A02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.85e-01 87.2% 54.8%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 37.0 3.78e-01 96.2% 65.8%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 31.0 3.01e-01 93.6% 42.4%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 37.0 3.86e-01 93.6% 73.2%
2a1rB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 47.0 3.23e-01 93.6% 45.2%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 33.0 3.01e-01 94.9% 43.3%
1bu8A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 44.0 3.96e-01 84.6% 100.0%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 28.0 3.25e-01 91.0% 68.0%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 44.0 3.81e-01 87.2% 92.6%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 38.0 3.29e-01 94.9% 44.9%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.54 43.0 3.21e-01 89.7% 42.1%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.87e-01 91.0% 77.6%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.54 30.0 2.85e-01 79.5% 42.0%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 42.0 3.73e-01 85.9% 98.2%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 3.79e-01 92.3% 81.8%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.08e-01 83.3% 40.1%
3fg1D03 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.60e-01 96.2% 55.3%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.52 34.0 3.05e-01 91.0% 44.4%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 43.0 3.66e-01 91.0% 90.6%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 39.0 2.58e-01 80.8% 42.8%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 34.0 2.71e-01 88.5% 31.6%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 37.0 2.81e-01 79.5% 64.1%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.26e-01 83.3% 54.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080048 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.74 57.0 4.27e-01 92.3% 36.0%
3513850 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 39.0 3.70e-01 91.0% 44.2%
3710573 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.64 55.0 3.89e-01 94.9% 43.3%
3595179 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 55.0 3.84e-01 94.9% 43.3%
3582722 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.62 40.0 2.51e-01 85.9% 11.5%
4463772 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.61 53.0 3.70e-01 98.7% 50.6%
4939488 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.61 55.0 3.69e-01 98.7% 45.9%
3175048 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.60 42.0 3.22e-01 73.1% 45.7%
5068716 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.59 53.0 3.45e-01 97.4% 57.8%
3788782 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.59 43.0 2.63e-01 92.3% 11.8%
4243735 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.59 50.0 3.52e-01 92.3% 53.0%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 29.0 3.05e-01 91.0% 48.6%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 29.0 3.25e-01 91.0% 56.7%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 28.0 2.85e-01 91.0% 43.8%
5051960 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 46.0 3.69e-01 91.0% 54.2%
3217770 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 29.0 2.73e-01 93.6% 36.0%
3182395 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 45.0 4.15e-01 91.0% 85.0%
3635699 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 39.0 3.49e-01 76.9% 84.5%
4997554 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.53 46.0 3.66e-01 94.9% 90.7%
5053966 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 34.0 3.39e-01 84.6% 61.2%
3390600 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.52 35.0 3.64e-01 96.2% 74.7%
3992567 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.17e-01 87.2% 47.2%
4579430 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.50 40.0 3.22e-01 87.2% 46.8%
3401325 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 28.0 2.97e-01 91.0% 58.5%
3481060 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 37.0 2.62e-01 76.9% 89.1%
D4 medium residues 222-351
PDB
Domain cluster: rep: ORF9__YP_438136__Ovine_gammaherpesvirus_2__10398__D341-509
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13482.13 best RNase_H_2 22.5 1.30e-04 87.7% 62.4%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gv9A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.82 69.0 5.64e-01 87.7% 58.4%
3iayA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 66.0 5.46e-01 87.7% 63.8%
4qclA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 69.0 5.33e-01 93.8% 54.2%
1y97A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 56.0 4.76e-01 93.8% 50.0%
3bl4A02 3.40.970.30 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains 0.54 23.0 3.34e-01 96.9% 100.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933243 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.85 75.0 6.67e-01 92.3% 68.6%
4951831 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.83 71.0 5.20e-01 88.5% 38.4%
4931271 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.83 72.0 5.96e-01 90.0% 55.7%
4259138 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.83 71.0 5.71e-01 90.0% 51.1%
4952383 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.83 71.0 5.47e-01 90.0% 45.3%
3466667 2484.1.1.161 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 70.0 4.32e-01 93.1% 25.2%
4874454 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.78 70.0 5.39e-01 93.8% 54.3%
5023018 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.78 64.0 5.34e-01 85.4% 62.9%
1822623 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.78 72.0 5.47e-01 96.9% 52.9%
3683241 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.78 69.0 5.06e-01 93.8% 50.0%
4323378 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.78 69.0 5.20e-01 93.8% 54.8%
1790898 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.78 69.0 5.29e-01 93.8% 53.1%
5005285 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.77 70.0 5.61e-01 96.2% 66.0%
3520437 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.76 68.0 5.89e-01 93.8% 76.8%
4805117 2484.1.1.161 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 68.0 5.60e-01 94.6% 65.9%
3496492 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 68.0 5.12e-01 94.6% 50.3%
3214818 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.76 68.0 4.75e-01 94.6% 40.8%
3614440 2484.1.1.177 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF2779 0.74 62.0 5.16e-01 89.2% 56.2%
3682884 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.71 59.0 4.83e-01 93.8% 50.7%
3599368 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 56.0 4.42e-01 96.2% 52.0%