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NC_047937.1__YP_009799186.1__HOS91_gp07__00007

Bact-Vir

NC_047937.1__YP_009799186.1__HOS91_gp07__00007

Identity

Accession:
NC_047937 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Helsettvirus› Yersinia_phage_fPS-54-ocr

TaxID: 2052753

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-86
PDB
Domain cluster: rep: OP380607.1__UYD60861.1__PFPBOIHM_00020__00020__D35-89
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.70 59.0 4.11e-01 94.5% 30.9%
2qyuA03 3.40.1850.10 Alpha Beta › 3-Layer(aba) Sandwich › HECT-like ubiquitin ligase fold › HECT-like ubiquitin ligase 0.59 40.0 3.75e-01 72.7% 69.3%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.80e-01 96.4% 50.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 35.0 3.69e-01 72.7% 66.0%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.57 46.0 4.24e-01 100.0% 70.1%
2g5fB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 46.0 2.81e-01 100.0% 27.0%
2pm9A02 2.20.25.400 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 33.0 3.58e-01 72.7% 96.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 46.0 4.30e-01 98.2% 76.1%
3lkxB00 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.54 38.0 3.87e-01 74.5% 85.2%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.54 35.0 3.24e-01 78.2% 48.1%
2xdvA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 43.0 3.64e-01 100.0% 94.5%
7febA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.53 44.0 3.47e-01 100.0% 96.2%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 42.0 3.35e-01 100.0% 41.4%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 36.0 3.25e-01 70.9% 69.3%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.36e-01 87.3% 55.7%
1fbnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.90e-01 81.8% 84.3%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.34e-01 92.7% 44.9%
1ej5A00 3.90.810.10 Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain 0.51 38.0 3.22e-01 85.5% 64.5%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.30e-01 92.7% 86.3%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.21e-01 92.7% 46.9%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 39.0 3.14e-01 100.0% 38.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4854144 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.61 51.0 3.93e-01 100.0% 43.7%
4572085 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.61 51.0 4.09e-01 100.0% 89.2%
3196827 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 41.0 3.84e-01 96.4% 54.7%
5057751 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 45.0 3.96e-01 83.6% 64.7%
3594610 3209.1.1.0 ↗ a+b two layers › RPL28 › RPL28 › RPL28 0.59 48.0 3.76e-01 100.0% 48.3%
4030254 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.59 46.0 2.63e-01 90.9% 25.1%
3444177 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 49.0 4.43e-01 98.2% 85.0%
None — 0.59 41.0 2.40e-01 74.5% 80.2%
5008101 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 36.0 2.84e-01 74.5% 30.9%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.30e-01 94.5% 37.3%
5074091 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.57 39.0 2.80e-01 70.9% 51.5%
2123017 295.1.1.10 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PnpCD_PnpD_N 0.57 44.0 3.19e-01 85.5% 30.4%
4348032 2.1.1.167 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RseC_MucC 0.56 42.0 3.94e-01 83.6% 92.9%
3282488 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.55 44.0 2.92e-01 96.4% 20.0%
3604284 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.75e-01 92.7% 53.7%
3783267 2485.1.1.78 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Suc_Fer-like 0.54 43.0 3.03e-01 98.2% 41.7%
3604107 210.1.1.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.54 44.0 3.11e-01 98.2% 89.5%
3997946 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.53 44.0 3.21e-01 100.0% 43.9%
3625996 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.53 43.0 3.70e-01 98.2% 76.0%
5057173 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 41.0 2.96e-01 87.3% 91.1%
5024247 210.1.1.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.53 43.0 3.05e-01 96.4% 88.4%
3434296 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 43.0 3.56e-01 98.2% 54.5%
3394861 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.53 35.0 2.44e-01 70.9% 27.2%
None — 0.52 42.0 2.42e-01 98.2% 19.1%
4394788 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.52 42.0 2.81e-01 100.0% 25.9%
4971721 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 34.0 2.74e-01 70.9% 57.0%
5075354 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.51 37.0 3.32e-01 83.6% 88.9%
3319085 4099.1.1.27 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 0.51 41.0 3.59e-01 100.0% 70.0%
4243231 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.51 41.0 2.42e-01 100.0% 42.0%
3743733 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 42.0 2.60e-01 100.0% 39.8%
4149575 3421.1.1.0 ↗ a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain 0.51 40.0 3.00e-01 90.9% 52.3%
3645309 4099.1.1.27 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 0.51 42.0 3.66e-01 100.0% 85.1%
3405306 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 40.0 3.28e-01 92.7% 53.9%
3576800 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.51 41.0 3.58e-01 100.0% 76.8%
3188313 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.50 40.0 3.16e-01 94.5% 39.3%
4968507 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.50 40.0 3.14e-01 100.0% 37.9%
4990314 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.50 37.0 2.92e-01 85.5% 67.1%