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NC_047946.1__YP_009799712.1__HOT00_gp08__00008

Bact-Vir

NC_047946.1__YP_009799712.1__HOT00_gp08__00008

Identity

Accession:
NC_047946 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Gyeongsanvirus› Ralstonia_phage_RsoP1EGY

TaxID: 2070026

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: rep: HQ615693.1__AEC53196.1__SCRM01_250__00250__D4-55
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 6.07e-01 100.0% 92.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 6.15e-01 100.0% 96.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 6.11e-01 100.0% 96.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 6.14e-01 100.0% 96.8%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.72 62.0 4.15e-01 100.0% 34.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.57e-01 100.0% 89.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.34e-01 100.0% 89.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 56.0 5.24e-01 98.1% 95.5%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.67 54.0 3.56e-01 92.3% 65.4%
4ad9A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.66 52.0 3.44e-01 86.5% 31.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 54.0 4.21e-01 100.0% 48.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.04e-01 100.0% 88.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.06e-01 92.3% 86.7%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 53.0 4.75e-01 100.0% 97.5%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.28e-01 78.8% 73.8%
4jg9A00 2.60.40.3830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 44.0 3.22e-01 75.0% 29.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 45.0 4.00e-01 78.8% 53.8%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 51.0 3.48e-01 100.0% 53.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 47.0 2.91e-01 90.4% 29.6%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.57 41.0 3.22e-01 82.7% 57.0%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.67e-01 86.5% 30.5%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.61e-01 84.6% 26.3%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.14e-01 86.5% 51.0%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.66e-01 86.5% 78.0%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.61e-01 92.3% 80.4%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 40.0 3.49e-01 82.7% 50.0%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.63e-01 88.5% 29.4%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.29e-01 84.6% 70.3%
5d5gA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.54 44.0 3.63e-01 98.1% 83.5%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.26e-01 84.6% 74.1%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.30e-01 86.5% 80.6%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.50e-01 86.5% 60.7%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 39.0 3.37e-01 80.8% 52.3%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.53 41.0 3.51e-01 98.1% 95.3%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.34e-01 100.0% 98.5%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.76e-01 100.0% 93.2%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.04e-01 84.6% 50.8%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.51 41.0 3.67e-01 94.2% 85.4%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 39.0 3.51e-01 88.5% 58.4%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 39.0 3.23e-01 98.1% 52.9%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.50 41.0 3.31e-01 100.0% 64.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 66.0 6.53e-01 92.3% 87.3%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.36e-01 90.4% 87.3%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.17e-01 92.3% 83.6%
5005813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 60.0 6.14e-01 96.2% 90.0%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 67.0 6.25e-01 100.0% 93.8%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 67.0 6.21e-01 100.0% 93.8%
3930366 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 59.0 5.64e-01 90.4% 96.7%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 6.08e-01 96.2% 92.7%
3466927 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.69 57.0 4.79e-01 92.3% 81.1%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 57.0 5.16e-01 100.0% 89.2%
3387010 1.1.17.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF7488 0.67 50.0 3.61e-01 80.8% 35.9%
3935101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.06e-01 96.2% 92.3%
3518934 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 47.0 2.93e-01 80.8% 22.3%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 48.0 3.23e-01 92.3% 26.6%
3630691 5.1.4.218 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT80_2nd 0.61 47.0 2.99e-01 86.5% 15.3%
3270288 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 47.0 3.85e-01 86.5% 77.0%
3433328 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 45.0 2.78e-01 86.5% 27.2%
3990517 5.1.4.502 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT80_2nd 0.59 48.0 2.77e-01 92.3% 11.4%
3255850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 40.0 3.01e-01 71.2% 48.6%
3400906 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 40.0 3.23e-01 71.2% 63.8%
3436240 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.58 48.0 2.98e-01 96.2% 80.5%
3485655 5.1.4.528 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT80_2nd 0.57 47.0 2.89e-01 96.2% 16.5%
3979396 3454.1.1.4 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › HofP 0.57 41.0 3.70e-01 82.7% 75.0%
3664013 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 45.0 2.95e-01 98.1% 97.3%
3230776 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.56 44.0 2.67e-01 86.5% 23.5%
3716988 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 42.0 2.67e-01 86.5% 56.1%
4026020 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.58e-01 86.5% 42.2%
3772396 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 40.0 2.53e-01 84.6% 27.7%
3609929 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.55 41.0 2.49e-01 86.5% 12.7%
3667367 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.55 41.0 2.72e-01 84.6% 40.0%
3925757 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.54 42.0 3.19e-01 90.4% 77.2%
3845007 5.1.5.183 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, DUF4800, NBCH_WD40 0.54 44.0 2.68e-01 96.2% 31.6%
2989643 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.54 41.0 2.56e-01 86.5% 37.1%
3397645 5.1.4.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.54 39.0 2.54e-01 84.6% 20.9%
3939798 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.54 41.0 2.55e-01 90.4% 33.0%
3743579 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 41.0 2.65e-01 92.3% 20.7%
3246924 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 39.0 2.73e-01 84.6% 62.4%
3304575 5.1.4.337 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_CDC20-Fz 0.53 40.0 2.54e-01 90.4% 46.8%
3199325 241.1.1.11 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Med14 0.53 42.0 3.05e-01 96.2% 43.9%
3570950 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.53 41.0 2.99e-01 98.1% 53.2%
3716056 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.58e-01 86.5% 50.0%
4661567 5.1.4.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ,PQQ_2 0.52 40.0 2.48e-01 90.4% 18.0%
3270570 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 37.0 3.08e-01 84.6% 69.6%
3926886 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.51 37.0 2.89e-01 82.7% 40.0%
3743467 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.51 38.0 2.41e-01 86.5% 26.2%
3450723 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.51 39.0 2.37e-01 90.4% 41.8%
3601135 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.61e-01 98.1% 82.4%
3557126 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 38.0 2.36e-01 88.5% 91.5%
3924096 5.1.4.102 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.50 41.0 2.67e-01 100.0% 91.0%
4562940 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.50 39.0 2.43e-01 90.4% 37.2%
3561050 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 43.0 2.39e-01 100.0% 41.2%
3889992 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.50 43.0 3.14e-01 100.0% 56.9%