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NC_047948.1__YP_009799981.1__HOT02_gp141__00140

Bact-Vir

NC_047948.1__YP_009799981.1__HOT02_gp141__00140

Identity

Accession:
NC_047948 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-84
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.61 56.0 4.67e-01 100.0% 59.9%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.60 47.0 4.72e-01 82.1% 83.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1144783 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.62 42.0 3.40e-01 70.2% 52.5%
3952776 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.61 43.0 4.74e-01 96.4% 93.8%
5049537 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.60 44.0 4.25e-01 81.0% 69.1%
3952923 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.59 42.0 3.96e-01 95.2% 62.0%
5070853 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.59 43.0 4.37e-01 94.0% 77.6%
3981149 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.57 43.0 4.49e-01 98.8% 86.1%
5080086 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.53 39.0 4.01e-01 97.6% 81.2%
3218708 378.1.2.1 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › Tox-GHH 0.51 37.0 3.89e-01 76.2% 100.0%
D2 high residues 86-138
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22083.3 best I-HmuI_NUMOD-like 35.9 6.00e-09 86.8% 97.8%
D3 high residues 154-209
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.63e-01 98.2% 80.9%
4h87A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.66 53.0 4.14e-01 91.1% 86.3%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.65 49.0 3.82e-01 94.6% 38.5%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.65 55.0 4.99e-01 96.4% 100.0%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.82e-01 94.6% 47.6%
2xfdA00 2.60.60.40 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.61 42.0 3.42e-01 94.6% 37.6%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 42.0 3.32e-01 94.6% 33.9%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 42.0 3.26e-01 94.6% 31.8%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 42.0 3.18e-01 94.6% 29.7%
2cspA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 3.78e-01 98.2% 48.0%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.58 38.0 3.06e-01 100.0% 31.9%
2nx8A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 49.0 3.49e-01 96.4% 72.6%
5lf5A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.69e-01 98.2% 53.0%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 45.0 3.79e-01 92.9% 95.2%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.74e-01 96.4% 50.5%
3qvaA00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.57 42.0 3.42e-01 94.6% 41.3%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.65e-01 98.2% 49.5%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 48.0 3.50e-01 96.4% 78.2%
2hvwA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 49.0 3.61e-01 96.4% 83.7%
1zq7A01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.57 49.0 3.78e-01 98.2% 48.8%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.67e-01 96.4% 55.1%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 48.0 3.49e-01 96.4% 81.2%
4ehiA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.56 47.0 3.45e-01 96.4% 60.3%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.18e-01 96.4% 37.9%
3djmA00 2.170.150.40 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Domain of unknown function (DUF427) 0.54 44.0 3.56e-01 92.9% 92.0%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.54 46.0 2.87e-01 100.0% 51.7%
2p8eA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 41.0 2.64e-01 83.9% 40.3%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 48.0 3.54e-01 100.0% 41.5%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.54 44.0 3.34e-01 96.4% 44.9%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 41.0 3.49e-01 96.4% 49.0%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.67e-01 94.6% 55.7%
1iamA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.60e-01 100.0% 50.0%
2pifA01 3.40.1640.10 Alpha Beta › 3-Layer(aba) Sandwich › PSTPO5379-like › PSTPO5379-like 0.53 44.0 3.39e-01 98.2% 80.3%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.52 42.0 3.46e-01 94.6% 91.2%
7mjrA04 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.52 40.0 3.50e-01 100.0% 53.3%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.49e-01 96.4% 51.6%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.21e-01 82.1% 57.4%
4ii2A06 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.51 37.0 3.29e-01 83.9% 100.0%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.33e-01 96.4% 46.3%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 3.03e-01 96.4% 36.8%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.25e-01 98.2% 99.3%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 44.0 3.79e-01 98.2% 66.3%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 40.0 3.29e-01 98.2% 46.2%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 43.0 3.55e-01 96.4% 86.4%
3v0dA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.18e-01 98.2% 93.0%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.46e-01 98.2% 56.3%
4fkeA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.26e-01 94.6% 51.7%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 39.0 3.27e-01 98.2% 46.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062453 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.74 49.0 3.73e-01 100.0% 30.4%
4414927 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.71 59.0 5.56e-01 96.4% 79.7%
2876 101.1.14.2 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.70 59.0 5.57e-01 96.4% 78.3%
4531584 4012.1.1.0 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.68 46.0 5.19e-01 94.6% 100.0%
2486933 7032.1.1.1 a+b two layers › Paratox › Paratox › Paratox › Paratox 0.66 41.0 3.91e-01 100.0% 51.5%
5005708 3755.3.1.127 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.66 41.0 2.90e-01 98.2% 19.4%
3503375 11.1.4.72 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_2nd 0.66 48.0 4.16e-01 96.4% 50.6%
3235395 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.66 58.0 3.83e-01 100.0% 94.3%
3743326 221.1.1.51 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.65 45.0 3.86e-01 100.0% 45.6%
3601029 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.65 53.0 4.08e-01 96.4% 84.3%
5030537 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 44.0 3.87e-01 98.2% 48.2%
4934452 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.64 44.0 3.87e-01 96.4% 48.2%
5055776 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 3.94e-01 94.6% 55.7%
3622469 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 3.88e-01 94.6% 56.0%
3604585 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 3.72e-01 100.0% 43.8%
3261452 11.1.4.98 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Ig_NOMO 0.60 43.0 3.68e-01 96.4% 46.7%
4961537 2492.1.1.17 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.59 52.0 3.79e-01 96.4% 84.8%
4966266 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 41.0 3.12e-01 96.4% 30.8%
3917355 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 46.0 3.81e-01 100.0% 48.0%
3221388 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 46.0 3.72e-01 92.9% 94.2%
5039365 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 41.0 3.14e-01 98.2% 31.9%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.57 42.0 2.92e-01 100.0% 22.5%
3565460 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 42.0 3.60e-01 98.2% 48.9%
3881786 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 43.0 3.59e-01 98.2% 47.0%
4620172 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.56 46.0 3.03e-01 98.2% 85.9%
4958377 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.56 37.0 3.94e-01 94.6% 83.3%
3765586 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.55 47.0 3.38e-01 96.4% 77.0%
4647191 11.1.1.619 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TcfC 0.55 41.0 3.80e-01 98.2% 60.0%
4991286 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 41.0 3.67e-01 82.1% 60.0%
3576334 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 39.0 3.54e-01 100.0% 55.0%
3627211 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.53 41.0 2.89e-01 89.3% 78.1%
4100100 221.1.1.68 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblA 0.53 38.0 3.04e-01 80.4% 83.7%
3542738 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.53 46.0 3.56e-01 100.0% 53.8%
4943640 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 2.92e-01 75.0% 92.5%
3778406 11.1.1.946 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2, Ig_3 0.52 45.0 3.02e-01 94.6% 27.4%
3807080 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.15e-01 98.2% 37.8%
142931 5095.1.1.1 beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.51 44.0 3.21e-01 96.4% 40.3%
5058907 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.18e-01 87.5% 97.4%
3649764 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 3.12e-01 98.2% 40.6%
3646017 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 37.0 3.08e-01 82.1% 95.5%
5042255 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.50 41.0 3.24e-01 98.2% 75.6%