Back to structures

NC_047948.1__YP_009799989.1__HOT02_gp149__00148

Bact-Vir

NC_047948.1__YP_009799989.1__HOT02_gp149__00148

Identity

Accession:
NC_047948 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-78
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7o62B01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.88 78.0 6.21e-01 100.0% 50.8%
3ehdA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.83 76.0 5.72e-01 100.0% 44.6%
7mjzA01 3.40.50.12160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylthiotransferase, N-terminal domain 0.81 48.0 3.94e-01 100.0% 34.4%
1s2gB00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.79 71.0 5.35e-01 100.0% 47.3%
1f8yA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.78 69.0 5.37e-01 100.0% 51.3%
2ynmD02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.74 55.0 4.64e-01 100.0% 49.1%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.71 54.0 4.66e-01 100.0% 51.8%
4h2dA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.71 50.0 3.84e-01 100.0% 32.9%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.68 49.0 4.66e-01 98.6% 64.3%
4c5cA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 51.0 4.84e-01 100.0% 67.9%
2d1pA00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.68 60.0 4.94e-01 100.0% 96.9%
3qq5A02 3.40.50.11420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 47.0 4.15e-01 100.0% 52.3%
4kqcA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 56.0 4.35e-01 100.0% 54.1%
2hy5B00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.62 54.0 4.49e-01 100.0% 97.7%
3rotA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 55.0 4.49e-01 100.0% 63.7%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 56.0 4.89e-01 100.0% 70.1%
2rgyA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 54.0 4.56e-01 100.0% 68.5%
3bilA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 55.0 4.61e-01 100.0% 67.5%
2iksA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 54.0 4.93e-01 100.0% 86.5%
3lftB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 54.0 4.29e-01 100.0% 57.1%
4y9tA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 54.0 4.28e-01 100.0% 58.6%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 54.0 4.19e-01 100.0% 54.8%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 53.0 4.14e-01 100.0% 55.6%
3cs3A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 47.0 3.83e-01 100.0% 45.7%
2fepA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 52.0 4.24e-01 100.0% 61.7%
3qkwB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 50.0 3.79e-01 100.0% 39.1%
3jvdB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 51.0 4.32e-01 100.0% 58.2%
1obhA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 49.0 3.32e-01 100.0% 83.3%
3h5oA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 50.0 4.17e-01 100.0% 64.6%
3qk7C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 47.0 3.80e-01 100.0% 46.2%
4xxhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 50.0 4.07e-01 100.0% 58.0%
3n0wA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 50.0 4.12e-01 100.0% 67.4%
1qrsA05 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 49.0 4.16e-01 100.0% 74.8%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.56 50.0 4.02e-01 100.0% 54.0%
4fe7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 44.0 3.73e-01 88.7% 52.0%
3gv0A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 47.0 3.92e-01 100.0% 70.7%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.54 45.0 3.76e-01 100.0% 80.1%
6ll8A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.54 48.0 3.56e-01 100.0% 48.4%
3lzdA03 3.40.50.11860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 3 0.53 48.0 4.24e-01 100.0% 72.5%
4mm1C00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.53 40.0 2.89e-01 85.9% 56.4%
1u6tA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 45.0 3.86e-01 100.0% 63.6%
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.51 38.0 3.52e-01 95.8% 61.2%
1t1vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 4.03e-01 100.0% 77.4%
4oevA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 42.0 3.09e-01 100.0% 95.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988471 2007.15.1.2 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.85 69.0 5.39e-01 100.0% 43.6%
4958602 2007.15.1.2 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.84 74.0 5.83e-01 100.0% 48.6%
4952190 2007.15.1.2 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.84 74.0 5.82e-01 100.0% 48.6%
3590648 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.83 66.0 5.13e-01 100.0% 41.4%
2410571 2007.15.1.2 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.83 74.0 5.84e-01 100.0% 50.4%
5008697 2007.15.1.19 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7768 0.83 75.0 6.62e-01 100.0% 70.0%
2465251 2498.2.1.0 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.82 52.0 4.45e-01 100.0% 42.6%
4466489 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.77 47.0 4.24e-01 100.0% 45.3%
5065538 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.77 51.0 4.24e-01 100.0% 40.0%
4586630 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.77 56.0 4.78e-01 100.0% 47.8%
4108951 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.76 51.0 4.50e-01 100.0% 47.6%
4190437 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.74 53.0 4.54e-01 100.0% 48.2%
4941552 2007.1.4.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain 0.73 42.0 3.91e-01 100.0% 44.4%
4372753 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.73 53.0 4.56e-01 100.0% 49.1%
4193230 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.72 54.0 5.21e-01 100.0% 70.0%
4987797 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.72 55.0 4.70e-01 100.0% 51.8%
3705733 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.71 44.0 4.00e-01 100.0% 47.4%
4369536 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.71 53.0 4.93e-01 100.0% 63.3%
4205651 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.70 55.0 4.62e-01 100.0% 51.3%
3387103 2003.1.10.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › GSP_synth 0.69 53.0 4.52e-01 100.0% 52.7%
5076560 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.68 53.0 4.19e-01 100.0% 42.0%
4611529 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.68 52.0 4.45e-01 100.0% 51.3%
4094928 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.67 55.0 4.63e-01 100.0% 53.3%
3596453 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.66 52.0 4.69e-01 100.0% 61.0%
3164068 2003.1.10.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › GSP_synth 0.65 53.0 4.77e-01 100.0% 65.3%
1953484 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.65 51.0 4.65e-01 100.0% 63.5%
5041793 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.65 54.0 4.98e-01 100.0% 71.1%
5000172 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.64 53.0 4.78e-01 100.0% 66.3%
1507198 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.64 57.0 5.02e-01 100.0% 80.0%
3588626 2007.1.2.8 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ABC_sub_bind 0.64 58.0 4.69e-01 100.0% 63.8%
3972389 7545.1.1.1 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.62 55.0 4.67e-01 100.0% 95.8%
4212413 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 55.0 5.04e-01 100.0% 74.5%
1758818 2007.1.2.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 0.61 55.0 4.83e-01 100.0% 79.8%
4505221 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 55.0 4.54e-01 100.0% 57.6%
2617273 2007.1.20.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.60 56.0 4.19e-01 100.0% 51.9%
3960263 2007.1.20.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.60 55.0 4.16e-01 100.0% 52.5%
5023771 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.60 41.0 4.08e-01 100.0% 69.3%
4971285 2007.15.1.2 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.59 49.0 4.08e-01 100.0% 49.3%
5079187 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.59 50.0 4.43e-01 100.0% 63.8%
4903237 2005.1.1.47 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.59 51.0 3.90e-01 95.8% 46.3%
3484216 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.57 49.0 3.78e-01 95.8% 42.5%
2066778 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.57 50.0 4.54e-01 100.0% 81.6%
5072778 2007.1.5.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.57 49.0 4.22e-01 100.0% 84.2%
4974385 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.56 48.0 3.88e-01 100.0% 57.3%
5053901 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.56 49.0 3.85e-01 100.0% 76.2%
3934088 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.56 48.0 3.98e-01 95.8% 52.3%
3339487 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.56 42.0 3.42e-01 95.8% 40.7%
4985417 2007.2.3.15 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 0.56 47.0 3.99e-01 100.0% 57.7%
4666010 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.55 48.0 4.32e-01 100.0% 69.0%
5080923 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.55 46.0 3.67e-01 94.4% 46.7%
4634314 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.54 49.0 4.05e-01 100.0% 68.0%
4222752 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.54 49.0 4.19e-01 100.0% 73.6%
4112050 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.51 45.0 3.48e-01 100.0% 57.0%
4636149 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.51 42.0 3.88e-01 100.0% 68.4%
3962956 7523.1.1.6 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Porphobil_deam 0.51 42.0 3.52e-01 100.0% 49.6%
1282261 2008.1.1.17 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.51 38.0 3.53e-01 95.8% 61.9%
4042949 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.50 41.0 3.68e-01 100.0% 65.0%