←Back to structures
NC_047949.1__YP_009800154.1__HOT03_gp104__00104
Bact-VirNC_047949.1__YP_009800154.1__HOT03_gp104__00104
Identity
- Accession:
- NC_047949 ↗
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Taxonomy
TaxID: 2138298
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 29-84
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d03A01 | 3.60.21.40 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › GpdQ, catalytic alpha/beta sandwich domain | 0.81 | 63.0 | 4.75e-01 | 100.0% | 35.9% |
| 3av0A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.78 | 70.0 | 4.48e-01 | 100.0% | 22.8% |
| 3kloA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.70 | 53.0 | 3.96e-01 | 100.0% | 32.6% |
| 5z87B02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.62 | 51.0 | 3.50e-01 | 100.0% | 53.2% |
| 4a8jF00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 3.36e-01 | 100.0% | 25.2% |
| 3l23A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.59 | 50.0 | 3.25e-01 | 100.0% | 44.0% |
| 3szpB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.59 | 43.0 | 3.00e-01 | 80.4% | 63.3% |
| 6ksyA01 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.59 | 47.0 | 3.18e-01 | 100.0% | 51.4% |
| 1no5B00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 44.0 | 3.66e-01 | 82.1% | 94.1% |
| 8dtpC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 39.0 | 2.60e-01 | 71.4% | 84.6% |
| 3canA00 | 3.80.30.10 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › pyruvate-formate lyase- activating enzyme | 0.58 | 47.0 | 3.57e-01 | 100.0% | 36.6% |
| 1gg1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 47.0 | 3.00e-01 | 98.2% | 31.0% |
| 2vxoA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 49.0 | 3.34e-01 | 100.0% | 69.2% |
| 2yfkA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.56 | 44.0 | 3.10e-01 | 89.3% | 63.3% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 47.0 | 3.57e-01 | 100.0% | 48.6% |
| 2ckrA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 44.0 | 2.91e-01 | 100.0% | 22.0% |
| 3gu3A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 42.0 | 3.23e-01 | 100.0% | 31.7% |
| 2hg2A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 42.0 | 2.75e-01 | 89.3% | 64.0% |
| 5izdA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 38.0 | 2.50e-01 | 100.0% | 15.5% |
| 6bs3B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 2.75e-01 | 92.9% | 21.0% |
| 4m1aA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 41.0 | 3.43e-01 | 87.5% | 81.3% |
| 1y44A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 2.90e-01 | 100.0% | 22.8% |
| 3er6A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.53 | 42.0 | 3.01e-01 | 92.9% | 32.3% |
| 3okzB00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.52 | 43.0 | 2.70e-01 | 91.1% | 33.6% |
| 5vbfA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 42.0 | 2.72e-01 | 91.1% | 72.2% |
| 1zbqA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 2.88e-01 | 100.0% | 69.3% |
| 4wpgA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.52 | 33.0 | 3.11e-01 | 71.4% | 47.4% |
| 3vhrA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 2.84e-01 | 92.9% | 75.3% |
| 7miqA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 30.0 | 2.80e-01 | 87.5% | 40.0% |
| 5klkB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 41.0 | 2.65e-01 | 92.9% | 73.4% |
| 3graA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 40.0 | 2.96e-01 | 98.2% | 31.4% |
| 1mzjB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 40.0 | 3.03e-01 | 100.0% | 52.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952430 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.79 | 69.0 | 4.34e-01 | 100.0% | 20.0% |
| 3997812 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.71 | 63.0 | 3.96e-01 | 100.0% | 20.0% |
| 4947760 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.58 | 38.0 | 3.45e-01 | 89.3% | 46.3% |
| 198104 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 47.0 | 3.57e-01 | 100.0% | 36.6% |
| 3646203 | 301.13.1.4 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Tubulin | 0.57 | 42.0 | 3.71e-01 | 80.4% | 55.3% |
| 5030133 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.57 | 46.0 | 3.33e-01 | 100.0% | 51.3% |
| 5009813 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 43.0 | 3.09e-01 | 89.3% | 80.5% |
| 4278951 | 301.7.1.7 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › FIST | 0.56 | 42.0 | 3.82e-01 | 100.0% | 57.6% |
| 3907140 | 9002.1.1.2 ↗ | a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › PPIP5K2_N | 0.55 | 37.0 | 3.75e-01 | 91.1% | 72.7% |
| 3336948 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.54 | 38.0 | 2.90e-01 | 76.8% | 28.8% |
| 3487247 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.54 | 44.0 | 3.11e-01 | 96.4% | 84.3% |
| 4056106 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.53 | 42.0 | 2.99e-01 | 89.3% | 53.7% |
| 4957143 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.53 | 37.0 | 2.82e-01 | 75.0% | 67.4% |
| 3980410 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.52 | 43.0 | 3.37e-01 | 91.1% | 42.5% |
| 4012578 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.52 | 42.0 | 3.14e-01 | 100.0% | 44.0% |
| 4005204 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.51 | 40.0 | 3.16e-01 | 96.4% | 85.5% |
| 3350736 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.50 | 40.0 | 2.73e-01 | 96.4% | 81.0% |