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NC_047950.1__YP_009800294.1__HOT04_gp101__00101

Bact-Vir

NC_047950.1__YP_009800294.1__HOT04_gp101__00101

Identity

Accession:
NC_047950 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Shenzhenvirus› Aeromonas_phage_AhSzw-1

TaxID: 2138299

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-104
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.74 34.0 3.59e-01 100.0% 47.3%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 31.0 3.02e-01 100.0% 37.0%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 25.0 2.88e-01 83.5% 45.5%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.64 31.0 3.53e-01 100.0% 59.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 27.0 3.42e-01 99.0% 63.9%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 26.0 3.34e-01 80.6% 66.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 26.0 3.31e-01 100.0% 64.9%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 33.0 2.97e-01 100.0% 38.4%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.60 31.0 3.36e-01 100.0% 55.6%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 26.0 3.54e-01 100.0% 86.7%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 25.0 3.26e-01 83.5% 70.9%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 24.0 3.04e-01 97.1% 61.7%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.55 25.0 3.47e-01 81.6% 86.5%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 29.0 2.92e-01 100.0% 46.3%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.53 30.0 3.20e-01 100.0% 60.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026577 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.78 39.0 5.21e-01 100.0% 90.9%
4939786 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.76 33.0 3.78e-01 100.0% 52.5%
4959991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 34.0 3.99e-01 99.0% 68.6%
3902875 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 32.0 3.89e-01 100.0% 69.2%
5022933 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.66 25.0 3.32e-01 82.5% 61.8%
3386077 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.65 30.0 4.07e-01 100.0% 93.3%
3542022 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.64 33.0 2.90e-01 100.0% 33.5%
4838661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 27.0 2.69e-01 86.4% 35.8%
3427749 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.62 28.0 3.42e-01 94.2% 64.6%
3482073 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 28.0 3.51e-01 94.2% 70.0%
4076804 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.62 27.0 3.59e-01 81.6% 76.4%
3505867 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 30.0 3.46e-01 100.0% 62.7%
4443892 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.60 27.0 3.57e-01 81.6% 78.2%
5061930 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 31.0 3.23e-01 100.0% 51.6%
5064574 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.59 26.0 3.33e-01 81.6% 68.3%
5052436 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 30.0 3.31e-01 99.0% 60.0%
4590962 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.58 26.0 3.32e-01 81.6% 70.0%
2994936 10.1.1.39 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › bCoV_S1_N 0.58 23.0 2.44e-01 98.1% 37.8%
3483766 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 34.0 3.49e-01 100.0% 59.0%
4886802 12.1.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.58 24.0 2.65e-01 82.5% 44.6%
2516752 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.56 28.0 3.62e-01 99.0% 84.5%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 29.0 3.25e-01 97.1% 65.3%
3952658 2484.1.1.113 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family2 0.55 38.0 3.62e-01 100.0% 60.0%
4942627 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 29.0 2.59e-01 98.1% 34.7%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.53 25.0 2.80e-01 100.0% 53.8%
4044986 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.52 28.0 3.24e-01 87.4% 70.7%
4336488 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 29.0 3.42e-01 99.0% 80.0%
4861971 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.52 27.0 3.38e-01 100.0% 96.0%
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 30.0 3.03e-01 100.0% 52.7%
3520584 3147.1.1.1 ↗ a+b two layers › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › DUF3013 0.50 33.0 3.12e-01 100.0% 55.2%