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NC_047950.1__YP_009800315.1__HOT04_gp122__00122

Bact-Vir

NC_047950.1__YP_009800315.1__HOT04_gp122__00122

Identity

Accession:
NC_047950 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Shenzhenvirus› Aeromonas_phage_AhSzw-1

TaxID: 2138299

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-143
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qbyA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 56.0 5.42e-01 98.9% 84.5%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.61 44.0 3.59e-01 76.3% 90.1%
1ztdA00 1.10.1520.20 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III 0.61 44.0 4.03e-01 76.3% 87.2%
4axzA00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.59 48.0 3.74e-01 90.3% 72.9%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 41.0 3.30e-01 76.3% 64.1%
2e5vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 2.98e-01 78.5% 77.1%
4jz6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 40.0 2.97e-01 81.7% 71.5%
5kf6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 44.0 3.21e-01 95.7% 76.5%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 38.0 2.79e-01 80.6% 66.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620713 148.1.3.27 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 0.80 60.0 6.55e-01 78.5% 97.3%
3188397 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.76 57.0 5.25e-01 77.4% 78.3%
4588724 148.1.3.49 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.76 56.0 6.10e-01 77.4% 97.3%
4012006 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 57.0 5.96e-01 100.0% 95.3%
4032310 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.69 51.0 4.33e-01 77.4% 68.0%
4932105 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.69 57.0 3.77e-01 89.2% 30.1%
3963765 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.69 60.0 4.74e-01 96.8% 62.6%
3845840 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 50.0 5.21e-01 89.2% 90.6%
5053956 148.1.3.50 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid 0.63 50.0 5.02e-01 94.6% 84.2%
3911781 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.58 42.0 3.63e-01 76.3% 94.0%
3723550 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.57 41.0 3.65e-01 77.4% 90.3%
4954611 1079.1.1.19 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DUF2162 0.54 39.0 3.06e-01 75.3% 54.7%
4974226 7524.1.1.0 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.53 45.0 3.20e-01 93.5% 74.7%