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NC_047950.1__YP_009800321.1__HOT04_gp128__00128
Bact-VirNC_047950.1__YP_009800321.1__HOT04_gp128__00128
Identity
- Accession:
- NC_047950 ↗
- Kingdom:
- phage
Quality
76.0
mean pLDDT
Taxonomy
TaxID: 2138299
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-90
Domain cluster:
rep: OR354840.1__WNM54417.1__CoNPh17_CDS0221__00221__D95-178
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.79 | 73.0 | 6.22e-01 | 100.0% | 66.1% |
| 1fouA02 | 2.40.500.10 | Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) | 0.67 | 56.0 | 4.75e-01 | 91.4% | 61.4% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.60 | 45.0 | 3.97e-01 | 98.8% | 53.3% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.60 | 43.0 | 3.69e-01 | 97.5% | 46.6% |
| 1m4jA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 42.0 | 3.61e-01 | 92.6% | 48.9% |
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 41.0 | 3.68e-01 | 100.0% | 53.4% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.55 | 37.0 | 3.44e-01 | 82.7% | 52.8% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.55 | 37.0 | 3.46e-01 | 82.7% | 55.0% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 42.0 | 2.80e-01 | 85.2% | 90.4% |
| 3os6C00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.54 | 44.0 | 2.94e-01 | 93.8% | 75.5% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 39.0 | 3.49e-01 | 97.5% | 55.5% |
| 4ipuA00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.52 | 42.0 | 3.55e-01 | 88.9% | 56.9% |
| 5hw3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 41.0 | 2.93e-01 | 90.1% | 89.2% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.51 | 34.0 | 3.22e-01 | 82.7% | 54.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225453 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.70 | 42.0 | 4.52e-01 | 97.5% | 70.0% |
| 3205074 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 37.0 | 4.41e-01 | 77.8% | 92.0% |
| 3627795 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 40.0 | 3.98e-01 | 75.3% | 69.4% |
| 3914632 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.54 | 42.0 | 3.57e-01 | 100.0% | 49.3% |
| 1952982 | 316.1.1.4 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2,DNA_pol_B_thumb | 0.54 | 40.0 | 3.17e-01 | 80.2% | 96.1% |
| 3856895 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 42.0 | 2.84e-01 | 87.7% | 48.4% |
| 3751253 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.53 | 32.0 | 2.43e-01 | 86.4% | 25.3% |
| 3642891 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.53 | 34.0 | 3.89e-01 | 93.8% | 96.4% |
| 3817314 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 40.0 | 2.37e-01 | 86.4% | 69.7% |
D2
medium
residues 108-207
Domain cluster:
rep: NC_047885.1__YP_009795144.1__HOS38_gp073__00145__D13-99