NC_047955.1__YP_009800566.1__HOT09_gp16__00016

Bact-Vir

Identity

Accession:: NC_047955 ↗
Kingdom:: phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Nerthusvirus› Pseudomonas_phage_Nerthus

TaxID: 2163984

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-169

PDB

Domain cluster: rep: NC_047778.1__YP_009787320.1__QLL94_gp20__00020__D40-226

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3rd4B00	2.40.50.660	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.72	40.0	5.16e-01	84.9%	96.3%
3o2zF00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.61	33.0	4.39e-01	87.7%	100.0%
3fhwA00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.60	39.0	4.61e-01	87.7%	96.0%
1v1qA00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.58	39.0	4.43e-01	85.6%	90.0%
5jpnC02	2.40.50.120	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.58	38.0	3.71e-01	88.4%	60.5%
3k8aB00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.58	37.0	4.29e-01	86.3%	91.3%
3n54B01	6.20.190.10	Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1	0.56	21.0	3.10e-01	90.4%	78.7%
1uw0A01	3.30.1740.10	Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type	0.55	30.0	3.56e-01	95.9%	78.1%
5aj3Q00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.55	35.0	3.98e-01	90.4%	85.3%
1l0wA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	33.0	3.74e-01	96.6%	83.0%
1xweA01	2.40.50.120	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.50	38.0	3.84e-01	93.2%	80.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3964606	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.80	73.0	6.87e-01	100.0%	82.4%
3284948	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.63	37.0	4.74e-01	80.8%	100.0%
1622905	719.1.1.4 ↗	beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N	0.61	30.0	4.07e-01	76.0%	97.1%
3910890	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.56	40.0	4.55e-01	100.0%	98.2%
3531702	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.53	41.0	4.17e-01	80.1%	92.9%
3842152	605.1.1.195 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › CaKB	0.53	39.0	4.21e-01	82.2%	88.0%
3904923	2.1.1.239 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CaKB	0.52	38.0	4.11e-01	82.2%	88.0%
3504130	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.52	27.0	3.01e-01	90.4%	60.0%
3357183	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.52	39.0	3.82e-01	78.1%	79.4%
2323987	2.1.1.243 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30831	0.50	43.0	4.39e-01	93.2%	95.0%
3709897	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.50	29.0	3.48e-01	75.3%	86.3%

D2 medium residues 176-220

PDB

Domain cluster: representative