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NC_047960.1__YP_009800899.1__HOT14_gp63__00063

Bact-Vir

NC_047960.1__YP_009800899.1__HOT14_gp63__00063

Identity

Accession:
NC_047960 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Badaguanvirus› Escherichia_phage_vB_EcoS_IME347

TaxID: 2496546

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-137
PDB
Domain cluster: rep: NC_020860.1__YP_007675713.1__CEPG_00037__00037__D13-136
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08774.18 best VRR_NUC 40.2 4.30e-10 78.7% 60.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qblE00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.87 69.0 7.21e-01 89.7% 88.1%
4qbnA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.82 54.0 6.49e-01 86.8% 98.9%
4qboA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.81 53.0 6.42e-01 88.2% 98.9%
5exeA02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 44.0 4.36e-01 85.3% 75.0%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.58 49.0 4.50e-01 90.4% 90.9%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 40.0 3.94e-01 72.1% 81.1%
1vkpB00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.56 39.0 2.98e-01 72.8% 50.4%
4basA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 4.13e-01 86.0% 90.7%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 29.0 3.68e-01 85.3% 90.8%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 33.0 4.00e-01 97.1% 96.5%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.85e-01 73.5% 79.1%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 32.0 3.54e-01 75.0% 73.6%
2i6dA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.52 42.0 4.06e-01 86.0% 88.5%
5ailA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 44.0 4.02e-01 91.9% 87.8%
2cyjA00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.51 37.0 3.97e-01 88.2% 88.0%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 4.09e-01 85.3% 85.9%
3flhB00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.50 35.0 3.70e-01 91.9% 81.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1349404 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.87 69.0 7.35e-01 89.0% 91.0%
1349405 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 54.0 6.49e-01 86.8% 98.9%
1348988 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.81 53.0 6.42e-01 88.2% 98.9%
3399114 2008.1.1.80 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FAST_2 0.61 50.0 5.24e-01 86.8% 98.4%
3330329 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.61 52.0 4.31e-01 90.4% 98.7%
4006806 2008.1.1.51 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC 0.60 51.0 4.66e-01 89.0% 90.2%
5050067 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.60 41.0 4.45e-01 86.8% 82.6%
3966163 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.59 50.0 4.28e-01 91.2% 95.4%
5058927 2011.1.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.56 46.0 3.45e-01 86.8% 69.0%
3248606 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.56 39.0 3.99e-01 72.1% 78.5%
3705026 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.56 39.0 3.91e-01 72.1% 82.9%
4383523 2008.1.1.188 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30180 0.55 47.0 3.84e-01 91.2% 64.3%
4991210 2004.1.1.175 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.51 41.0 3.43e-01 84.6% 91.6%
5032065 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.51 41.0 4.10e-01 85.3% 87.9%
4649189 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 41.0 3.41e-01 86.0% 79.9%
3936488 2004.1.1.47 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha 0.50 40.0 3.28e-01 86.0% 88.8%