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NC_047964.1__YP_009801149.1__HOT18_gp41__00041
Bact-VirNC_047964.1__YP_009801149.1__HOT18_gp41__00041
Identity
- Accession:
- NC_047964 ↗
- Kingdom:
- phage
Quality
78.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Ningirsuvirus›
Dickeya_phage_Ninurta
TaxID: 2163631
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 540-639
Domain cluster:
rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13884.12 best | Peptidase_S74 | 26.7 | 7.70e-06 | 54.0% | 70.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 68.0 | 5.72e-01 | 100.0% | 83.9% |
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 61.0 | 5.74e-01 | 94.0% | 91.6% |
| 3f02B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 30.0 | 3.03e-01 | 74.0% | 53.0% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 43.0 | 3.55e-01 | 97.0% | 86.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225281 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.91 | 77.0 | 6.54e-01 | 100.0% | 58.7% |
| 3944436 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.89 | 74.0 | 7.10e-01 | 100.0% | 78.2% |
| 3618364 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.88 | 67.0 | 6.32e-01 | 90.0% | 67.8% |
| 3563383 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.87 | 81.0 | 6.79e-01 | 100.0% | 62.6% |
| 3273707 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.80 | 70.0 | 6.39e-01 | 91.0% | 72.8% |
| 5023262 | 327.11.2.82 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 | 0.57 | 27.0 | 3.25e-01 | 79.0% | 66.2% |
| 5028348 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.56 | 47.0 | 3.80e-01 | 91.0% | 49.7% |
| 5025448 | 1075.1.1.3 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 | 0.54 | 37.0 | 2.64e-01 | 100.0% | 25.0% |
| 3900904 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 31.0 | 3.30e-01 | 97.0% | 64.4% |
| 3594086 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.53 | 38.0 | 2.92e-01 | 76.0% | 86.2% |
| 3586391 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.52 | 39.0 | 2.78e-01 | 79.0% | 72.9% |
| 4997255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 4.16e-01 | 86.0% | 98.0% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 41.0 | 3.59e-01 | 88.0% | 61.3% |
| 3234312 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.51 | 46.0 | 3.12e-01 | 99.0% | 75.7% |
| 5061514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.28e-01 | 85.0% | 50.5% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.25e-01 | 87.0% | 95.1% |
| 3212571 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.50 | 42.0 | 2.86e-01 | 93.0% | 85.5% |
D2
medium
residues 29-141
Domain cluster:
rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03906.21 best | Phage_T7_tail | 140.6 | 3.70e-41 | 100.0% | 84.8% |
D3
medium
residues 448-525