←Back to structures
NC_047965.1__YP_009801201.1__HOT19_gp47__00047
Bact-VirNC_047965.1__YP_009801201.1__HOT19_gp47__00047
Identity
- Accession:
- NC_047965 ↗
- Kingdom:
- phage
Quality
70.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Pfluvirus›
Pseudomonas_phage_22PfluR64PP
TaxID: 2163970
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-69
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3v7nA01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.74 | 55.0 | 4.66e-01 | 81.7% | 49.5% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 60.0 | 5.47e-01 | 95.0% | 77.6% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.72 | 61.0 | 4.31e-01 | 98.3% | 32.6% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 49.0 | 4.65e-01 | 80.0% | 74.6% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 51.0 | 4.77e-01 | 86.7% | 96.0% |
| 1zp2A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 54.0 | 4.47e-01 | 100.0% | 53.0% |
| 4ivnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 48.0 | 4.55e-01 | 86.7% | 77.6% |
| 1yisA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.63 | 40.0 | 3.42e-01 | 76.7% | 37.9% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.63 | 54.0 | 5.18e-01 | 100.0% | 87.3% |
| 3e0fA02 | 1.10.150.650 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 44.0 | 4.17e-01 | 81.7% | 68.9% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.59 | 41.0 | 3.60e-01 | 83.3% | 45.9% |
| 2z15A00 | 3.90.640.90 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain | 0.59 | 50.0 | 4.06e-01 | 98.3% | 72.3% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.59 | 43.0 | 3.51e-01 | 80.0% | 79.8% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.56 | 46.0 | 2.95e-01 | 96.7% | 80.3% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.56 | 41.0 | 3.78e-01 | 78.3% | 61.0% |
| 1eb7A01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.56 | 45.0 | 3.54e-01 | 95.0% | 99.3% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 36.0 | 2.92e-01 | 75.0% | 52.6% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.52 | 38.0 | 3.03e-01 | 85.0% | 52.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050239 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 56.0 | 5.19e-01 | 90.0% | 75.6% |
| 2075033 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.68 | 50.0 | 4.62e-01 | 80.0% | 62.0% |
| 3697157 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.66 | 58.0 | 4.93e-01 | 100.0% | 64.0% |
| 5080131 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.66 | 56.0 | 4.61e-01 | 100.0% | 51.7% |
| 4987475 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 54.0 | 5.37e-01 | 98.3% | 89.2% |
| 3979957 | 1.1.9.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 | 0.64 | 44.0 | 3.28e-01 | 71.7% | 70.7% |
| 4973792 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.63 | 51.0 | 4.74e-01 | 98.3% | 70.0% |
| 4994146 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.62 | 40.0 | 3.22e-01 | 83.3% | 31.7% |
| 3596737 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.62 | 32.0 | 2.50e-01 | 80.0% | 21.5% |
| 3309955 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 50.0 | 4.43e-01 | 100.0% | 85.0% |
| 3699966 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.61 | 51.0 | 4.26e-01 | 98.3% | 52.7% |
| 5082532 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 49.0 | 4.68e-01 | 100.0% | 75.7% |
| 3439039 | 101.1.1.66 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 | 0.60 | 44.0 | 3.44e-01 | 80.0% | 36.2% |
| 3714100 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.59 | 47.0 | 4.40e-01 | 81.7% | 82.9% |
| 3878587 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 44.0 | 4.05e-01 | 85.0% | 71.8% |
| 3212897 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.58 | 39.0 | 3.68e-01 | 70.0% | 68.0% |
| 5012158 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.56 | 42.0 | 3.74e-01 | 85.0% | 82.1% |
| 3588166 | 1046.1.1.1 ↗ | alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 | 0.55 | 42.0 | 3.23e-01 | 85.0% | 92.2% |
| 3251424 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.53 | 41.0 | 3.90e-01 | 90.0% | 75.7% |
| 3984129 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 44.0 | 4.31e-01 | 100.0% | 96.9% |
| 5025960 | 101.1.1.558 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7523 | 0.51 | 37.0 | 3.85e-01 | 78.3% | 85.5% |
| 3974118 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 40.0 | 3.63e-01 | 93.3% | 80.0% |
| 3432555 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 42.0 | 3.92e-01 | 96.7% | 77.5% |
| 4074201 | 1046.1.1.1 ↗ | alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 | 0.51 | 40.0 | 3.05e-01 | 86.7% | 87.6% |
| 3573598 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.51 | 39.0 | 3.36e-01 | 90.0% | 59.1% |