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NC_047977.1__YP_009802077.1__HOT31_gp139__00139

Bact-Vir

NC_047977.1__YP_009802077.1__HOT31_gp139__00139

Identity

Accession:
NC_047977 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.79 64.0 4.76e-01 87.5% 51.9%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 64.0 5.21e-01 100.0% 82.3%
2b1eA02 1.20.1310.30 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › 0.73 63.0 4.87e-01 100.0% 64.2%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 57.0 5.44e-01 85.9% 77.3%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 64.0 4.41e-01 100.0% 35.6%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.72 59.0 4.52e-01 89.1% 80.1%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 60.0 4.38e-01 98.4% 38.7%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 54.0 5.00e-01 85.9% 70.6%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 57.0 5.42e-01 92.2% 85.5%
1yz5B00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.70 59.0 4.13e-01 100.0% 69.0%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.69 53.0 5.34e-01 82.8% 93.7%
2a72A00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.68 57.0 4.49e-01 92.2% 46.6%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.68 51.0 3.57e-01 81.2% 86.8%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 48.0 4.92e-01 75.0% 78.7%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 50.0 4.72e-01 89.1% 65.4%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 53.0 5.03e-01 87.5% 85.7%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 54.0 4.41e-01 90.6% 57.1%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 57.0 4.38e-01 93.8% 43.4%
3lxuX06 1.25.40.710 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 56.0 3.79e-01 95.3% 25.5%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 53.0 4.92e-01 90.6% 77.9%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.67 52.0 4.59e-01 85.9% 69.1%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 56.0 3.83e-01 100.0% 28.9%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.65 52.0 4.63e-01 92.2% 77.8%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 52.0 4.68e-01 90.6% 74.2%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.65 52.0 4.29e-01 90.6% 47.9%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 55.0 4.55e-01 100.0% 65.3%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 51.0 4.68e-01 92.2% 79.1%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.64 50.0 3.74e-01 87.5% 40.4%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.64 51.0 4.44e-01 90.6% 75.7%
3frqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 54.0 3.98e-01 100.0% 51.1%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.63 48.0 4.81e-01 84.4% 100.0%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.62 53.0 4.58e-01 100.0% 83.3%
2e2eA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 52.0 4.07e-01 96.9% 42.4%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.62 47.0 3.85e-01 85.9% 69.0%
5domA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.62 47.0 4.27e-01 84.4% 85.6%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.61 47.0 3.91e-01 82.8% 74.6%
1om2A00 1.20.960.10 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Mitochondrial outer membrane translocase complex, subunit Tom20 domain 0.61 53.0 4.68e-01 100.0% 66.3%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.58 45.0 4.10e-01 85.9% 78.4%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 44.0 3.89e-01 82.8% 60.6%
1dj2A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.57 45.0 3.89e-01 85.9% 78.8%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 3.77e-01 100.0% 58.4%
1ux8A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 44.0 3.72e-01 89.1% 90.7%
4myzC00 6.10.250.3430 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 34.0 3.75e-01 75.0% 76.5%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.56 45.0 3.45e-01 90.6% 47.4%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 44.0 3.45e-01 85.9% 83.7%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 43.0 3.40e-01 87.5% 85.7%
3nrhA00 1.20.120.1550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Protein of unknown function DUF5063 0.54 46.0 3.56e-01 100.0% 88.6%
2xrhA00 1.20.120.1430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle 0.53 44.0 3.89e-01 96.9% 72.0%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.52 44.0 3.99e-01 96.9% 80.9%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3661970 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 64.0 4.53e-01 92.2% 34.2%
3641457 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.74 60.0 4.76e-01 89.1% 48.5%
3660515 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.73 60.0 5.88e-01 92.2% 92.9%
3678733 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.73 59.0 5.81e-01 92.2% 92.9%
3940186 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.72 60.0 5.62e-01 92.2% 73.8%
4025667 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.72 62.0 4.97e-01 100.0% 62.2%
3796824 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.72 60.0 5.83e-01 92.2% 84.3%
5070891 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 58.0 5.44e-01 90.6% 86.3%
3511170 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.71 58.0 5.51e-01 90.6% 82.7%
3740780 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.71 57.0 5.43e-01 89.1% 84.0%
3286501 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 62.0 4.79e-01 100.0% 56.6%
3824114 604.6.1.24 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF6857 0.70 62.0 4.93e-01 100.0% 79.2%
3251736 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.70 60.0 4.29e-01 100.0% 44.5%
3675605 603.1.1.17 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.70 60.0 4.08e-01 100.0% 73.0%
4180109 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 53.0 4.71e-01 79.7% 63.3%
3641172 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.69 49.0 4.46e-01 76.6% 72.2%
3174410 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.68 59.0 4.40e-01 100.0% 75.3%
3571190 109.25.1.7 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › PF26588 0.67 57.0 4.84e-01 100.0% 64.3%
3919069 176.1.1.2 alpha arrays › Annexin › Annexin › Annexin › Annexin_2 0.67 58.0 4.98e-01 100.0% 74.3%
4520363 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 52.0 4.65e-01 82.8% 64.4%
5078844 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 52.0 4.87e-01 92.2% 87.5%
5001327 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.63 48.0 4.35e-01 82.8% 62.2%
3704748 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 46.0 4.45e-01 81.2% 94.7%
3852 622.2.1.1 alpha bundles › YvfG-like › YvfG-like › YvfG-like › YvfG 0.63 48.0 4.81e-01 84.4% 100.0%
154362 371.1.1.3 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_3 0.62 51.0 4.30e-01 98.4% 97.6%
3602825 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.62 50.0 4.12e-01 93.8% 50.0%
3999761 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 44.0 3.50e-01 75.0% 84.4%
5051839 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.62 46.0 4.32e-01 81.2% 67.5%
4610814 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.61 52.0 4.34e-01 95.3% 80.0%
3675450 109.4.1.621 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.61 51.0 3.84e-01 98.4% 62.9%
3993135 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 45.0 3.25e-01 81.2% 88.2%
3733932 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.60 43.0 4.10e-01 78.1% 67.5%
3938533 3873.1.1.0 a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain 0.60 46.0 3.75e-01 85.9% 44.5%
5050917 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.60 47.0 4.41e-01 87.5% 70.0%
3212676 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.60 45.0 4.34e-01 85.9% 75.6%
3860819 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 44.0 3.78e-01 87.5% 55.5%
4164636 185.1.1.5 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Gliadin 0.57 50.0 4.13e-01 98.4% 86.1%
4477211 2004.1.1.53 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt 0.56 44.0 2.72e-01 87.5% 14.4%
3911818 3832.1.1.1 alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.55 45.0 3.42e-01 90.6% 51.5%
4036208 2004.1.1.53 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt 0.55 43.0 2.67e-01 87.5% 14.0%
4617196 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.55 46.0 4.16e-01 93.8% 74.4%
3407816 3832.1.1.1 alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.54 43.0 3.28e-01 89.1% 50.9%
146980 3201.1.1.1 alpha arrays › HP0721 › HP0721 › HP0721 › DUF1104 0.53 44.0 3.89e-01 96.9% 72.0%
4028201 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 42.0 3.63e-01 96.9% 77.3%