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NC_047985.1__YP_009802517.1__HOT39_gp15__00015

Bact-Vir

NC_047985.1__YP_009802517.1__HOT39_gp15__00015

Identity

Accession:
NC_047985 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Tlsvirus› Escherichia_phage_LL5

TaxID: 2233992

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: rep: NC_049817.1__YP_009901175.1__H1N81_gp36__00036__D2-70
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.52e-01 100.0% 94.7%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.22e-01 100.0% 94.3%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 55.0 4.24e-01 100.0% 91.1%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.17e-01 100.0% 80.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.94e-01 100.0% 71.8%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 5.02e-01 100.0% 83.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.91e-01 100.0% 79.4%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 5.13e-01 100.0% 90.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.73e-01 100.0% 97.9%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.35e-01 100.0% 96.6%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 52.0 4.24e-01 100.0% 100.0%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 52.0 4.27e-01 100.0% 95.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.41e-01 100.0% 80.9%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 5.17e-01 100.0% 93.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.98e-01 100.0% 98.1%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 5.07e-01 100.0% 90.3%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 4.85e-01 100.0% 80.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.43e-01 100.0% 72.9%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.60 48.0 2.69e-01 93.5% 96.7%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 5.18e-01 100.0% 98.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 5.06e-01 100.0% 89.4%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 45.0 4.34e-01 98.4% 71.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 5.00e-01 100.0% 94.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 5.06e-01 100.0% 92.2%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.33e-01 100.0% 66.3%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 44.0 2.84e-01 83.9% 25.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 51.0 5.02e-01 100.0% 92.4%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 3.94e-01 87.1% 92.9%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 42.0 4.05e-01 100.0% 67.1%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 49.0 4.90e-01 100.0% 98.4%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.57 42.0 3.73e-01 82.3% 84.5%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 44.0 4.28e-01 96.8% 77.1%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.21e-01 100.0% 90.6%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.55 36.0 4.00e-01 95.2% 97.7%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.75e-01 95.2% 100.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.02e-01 98.4% 85.5%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.00e-01 98.4% 82.8%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.55 41.0 3.85e-01 82.3% 67.1%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.53 39.0 4.25e-01 80.6% 100.0%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.16e-01 98.4% 80.0%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 47.0 3.80e-01 100.0% 94.0%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.53 38.0 3.52e-01 79.0% 84.1%
3k6oA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.53 41.0 3.99e-01 90.3% 95.9%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.70e-01 98.4% 67.3%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 40.0 2.84e-01 88.7% 27.5%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.98e-01 95.2% 81.9%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.54e-01 100.0% 93.1%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 41.0 3.78e-01 95.2% 88.8%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 40.0 3.78e-01 91.9% 85.0%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 43.0 2.71e-01 100.0% 21.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.91e-01 98.4% 90.0%
3261986 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 53.0 5.44e-01 100.0% 91.5%
3503780 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 53.0 5.26e-01 100.0% 83.1%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.66 50.0 3.61e-01 100.0% 29.1%
3275832 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.65 49.0 5.18e-01 100.0% 92.7%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.65 53.0 3.88e-01 100.0% 33.3%
3774821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.99e-01 100.0% 85.0%
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 53.0 5.08e-01 100.0% 78.6%
3479384 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 3.86e-01 100.0% 46.2%
3619599 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 52.0 4.91e-01 100.0% 73.3%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 52.0 5.33e-01 100.0% 91.7%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.64 45.0 3.73e-01 100.0% 40.9%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.64 48.0 4.37e-01 100.0% 60.0%
3267345 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 43.0 4.55e-01 100.0% 81.8%
3907870 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 51.0 4.76e-01 100.0% 69.6%
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.63 43.0 3.98e-01 98.4% 55.0%
3893368 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.63 48.0 4.82e-01 100.0% 80.0%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 3.92e-01 100.0% 49.5%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 51.0 4.92e-01 100.0% 78.6%
3514453 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 51.0 4.79e-01 100.0% 73.3%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.62 42.0 4.38e-01 100.0% 80.0%
4016003 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.62 50.0 3.76e-01 90.3% 80.0%
3234947 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 51.0 5.04e-01 100.0% 86.2%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 50.0 4.96e-01 100.0% 85.9%
3231704 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 50.0 4.94e-01 98.4% 84.6%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 3.28e-01 98.4% 28.0%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.78e-01 100.0% 78.6%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.63e-01 100.0% 85.0%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.61 49.0 3.36e-01 100.0% 25.0%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.61e-01 100.0% 73.3%
3783847 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 52.0 5.11e-01 100.0% 89.2%
3899589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 5.00e-01 96.8% 91.7%
3722144 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.61 50.0 4.09e-01 100.0% 90.3%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.79e-01 98.4% 100.0%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.06e-01 100.0% 85.3%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.95e-01 96.8% 96.4%
3789233 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 49.0 4.85e-01 100.0% 86.2%
4964699 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.60 51.0 4.41e-01 98.4% 82.0%
3995675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 49.0 5.02e-01 100.0% 95.0%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.57 50.0 4.23e-01 100.0% 63.8%
1746358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.14e-01 100.0% 68.5%
4002679 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.56 48.0 3.92e-01 100.0% 50.8%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.28e-01 100.0% 85.0%
3505725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.21e-01 98.4% 90.9%
4561895 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.55 44.0 3.17e-01 95.2% 41.9%
3592082 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.09e-01 100.0% 77.8%
4881251 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.53 43.0 2.44e-01 91.9% 9.8%
4012913 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 44.0 3.18e-01 100.0% 41.0%
4188685 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 44.0 2.90e-01 95.2% 61.1%
3973363 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 39.0 3.75e-01 83.9% 86.7%
4982692 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.52 39.0 3.26e-01 82.3% 78.3%
3938425 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.72e-01 95.2% 81.1%
4026431 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.92e-01 100.0% 84.6%
2462227 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 43.0 3.45e-01 100.0% 82.7%
4532808 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.50 35.0 3.82e-01 80.6% 94.0%