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NC_047985.1__YP_009802580.1__HOT39_gp78__00078
Bact-VirNC_047985.1__YP_009802580.1__HOT39_gp78__00078
Identity
- Accession:
- NC_047985 ↗
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Taxonomy
TaxID: 2233992
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x9aA00 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.68 | 38.0 | 3.92e-01 | 87.1% | 55.7% |
| 3duzA02 | 2.40.50.710 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 46.0 | 4.88e-01 | 79.0% | 98.1% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 46.0 | 3.76e-01 | 100.0% | 40.0% |
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 52.0 | 4.51e-01 | 100.0% | 71.0% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 47.0 | 4.99e-01 | 98.4% | 100.0% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.62 | 44.0 | 3.67e-01 | 100.0% | 41.6% |
| 4a7kA03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.61 | 49.0 | 3.86e-01 | 98.4% | 92.4% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 49.0 | 5.06e-01 | 98.4% | 98.2% |
| 1z0mA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 40.0 | 3.62e-01 | 96.8% | 48.3% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 45.0 | 3.54e-01 | 100.0% | 36.6% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.59 | 51.0 | 4.75e-01 | 100.0% | 86.3% |
| 5bxrA03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.58 | 45.0 | 3.59e-01 | 90.3% | 90.8% |
| 1c8zA00 | 3.20.90.10 | Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A | 0.58 | 44.0 | 2.97e-01 | 85.5% | 93.2% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 43.0 | 4.45e-01 | 100.0% | 93.0% |
| 2rrfA00 | 2.30.29.160 | Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal | 0.57 | 47.0 | 3.81e-01 | 100.0% | 68.1% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 48.0 | 4.48e-01 | 100.0% | 74.7% |
| 1v5rA00 | 3.30.920.20 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain | 0.57 | 45.0 | 3.90e-01 | 87.1% | 81.4% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 48.0 | 3.63e-01 | 100.0% | 39.1% |
| 2egeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 49.0 | 4.62e-01 | 100.0% | 88.0% |
| 2qlvB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.61e-01 | 98.4% | 54.0% |
| 2jmcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 35.0 | 3.30e-01 | 79.0% | 49.4% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 46.0 | 4.56e-01 | 100.0% | 89.4% |
| 3h6rA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 46.0 | 3.63e-01 | 100.0% | 96.7% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 3.49e-01 | 100.0% | 48.0% |
| 1mkfA01 | 2.60.40.1330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.10e-01 | 88.7% | 97.5% |
| 7tbdB02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.55 | 37.0 | 2.82e-01 | 71.0% | 82.2% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.55 | 40.0 | 4.09e-01 | 100.0% | 85.0% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.80e-01 | 100.0% | 62.1% |
| 4a2lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 47.0 | 3.00e-01 | 98.4% | 89.0% |
| 4k4kA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.53 | 42.0 | 3.47e-01 | 100.0% | 44.9% |
| 4qiwB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.53 | 45.0 | 3.42e-01 | 100.0% | 85.3% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 3.59e-01 | 100.0% | 56.7% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.52 | 42.0 | 3.75e-01 | 91.9% | 83.7% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.40e-01 | 100.0% | 71.1% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 42.0 | 3.43e-01 | 98.4% | 75.9% |
| 2ej9A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 43.0 | 3.14e-01 | 96.8% | 56.9% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 43.0 | 2.78e-01 | 100.0% | 91.6% |
| 1qs1A01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.51 | 35.0 | 2.52e-01 | 72.6% | 75.9% |
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 44.0 | 2.87e-01 | 100.0% | 88.6% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.51 | 41.0 | 3.48e-01 | 91.9% | 75.9% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 43.0 | 3.93e-01 | 98.4% | 79.1% |
| 1g3pA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.51 | 39.0 | 3.49e-01 | 83.9% | 70.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610569 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.71 | 58.0 | 3.47e-01 | 90.3% | 15.1% |
| 3476221 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.69 | 60.0 | 3.56e-01 | 98.4% | 15.5% |
| 4367301 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 53.0 | 5.59e-01 | 100.0% | 94.5% |
| 3499649 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.69 | 59.0 | 5.29e-01 | 98.4% | 83.3% |
| 3484371 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.67 | 58.0 | 5.18e-01 | 98.4% | 90.0% |
| 3499381 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.67 | 58.0 | 3.35e-01 | 98.4% | 13.6% |
| 3262827 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.66 | 58.0 | 3.40e-01 | 98.4% | 14.0% |
| 3471097 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.65 | 55.0 | 4.67e-01 | 98.4% | 77.3% |
| 3931418 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 54.0 | 5.47e-01 | 100.0% | 96.7% |
| 4009281 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.64 | 47.0 | 4.01e-01 | 100.0% | 47.6% |
| 3976863 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.63 | 44.0 | 3.82e-01 | 100.0% | 44.8% |
| 3276452 | 220.4.1.6 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 | 0.63 | 52.0 | 3.10e-01 | 95.2% | 12.1% |
| 4525683 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.62 | 44.0 | 3.65e-01 | 100.0% | 39.8% |
| 5065350 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 52.0 | 4.32e-01 | 100.0% | 84.2% |
| 3620221 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 53.0 | 4.44e-01 | 100.0% | 68.2% |
| 3942297 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.61 | 43.0 | 3.61e-01 | 100.0% | 41.6% |
| 3927363 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 43.0 | 4.67e-01 | 95.2% | 96.0% |
| 3903323 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.60 | 49.0 | 4.64e-01 | 100.0% | 76.0% |
| 4028468 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.59 | 45.0 | 3.84e-01 | 100.0% | 49.5% |
| 3958137 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 4.55e-01 | 100.0% | 77.8% |
| 3647487 | 1.1.1.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C | 0.58 | 40.0 | 2.74e-01 | 71.0% | 76.4% |
| 4253206 | 4.1.1.127 ↗ | beta barrels › SH3 › SH3 › SH3 › DtxR | 0.58 | 49.0 | 4.46e-01 | 100.0% | 77.8% |
| 3965202 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.58 | 42.0 | 3.54e-01 | 79.0% | 81.8% |
| 5040273 | 4.6.1.4 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 | 0.58 | 43.0 | 4.08e-01 | 82.3% | 78.7% |
| 3925426 | 220.1.1.176 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 | 0.57 | 49.0 | 3.87e-01 | 100.0% | 65.0% |
| 4505797 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.57 | 42.0 | 4.21e-01 | 100.0% | 80.0% |
| 4302902 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.56 | 49.0 | 3.91e-01 | 100.0% | 90.8% |
| 3603402 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.56 | 45.0 | 4.09e-01 | 100.0% | 63.3% |
| 4660084 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.55 | 40.0 | 3.95e-01 | 100.0% | 73.9% |
| 4006143 | 3943.1.1.5 ↗ | beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N | 0.55 | 44.0 | 3.95e-01 | 95.2% | 64.2% |
| 5043358 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 4.36e-01 | 100.0% | 84.0% |
| 4956695 | 4.15.1.0 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like | 0.54 | 45.0 | 4.23e-01 | 100.0% | 81.2% |
| 4429329 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.54 | 39.0 | 3.94e-01 | 100.0% | 78.5% |
| 3234632 | 389.1.2.9 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 | 0.54 | 43.0 | 3.94e-01 | 93.5% | 68.9% |
| 3616247 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.90e-01 | 95.2% | 69.4% |
| 4405689 | 220.1.1.228 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PKH3_C | 0.54 | 45.0 | 3.54e-01 | 100.0% | 84.0% |
| 5010554 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.53 | 42.0 | 4.21e-01 | 100.0% | 86.2% |
| 3679910 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 41.0 | 2.89e-01 | 98.4% | 25.7% |
| 4302032 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.52 | 40.0 | 4.03e-01 | 100.0% | 84.6% |
| 3281614 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 43.0 | 3.78e-01 | 100.0% | 96.2% |
| 5010981 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 37.0 | 3.85e-01 | 75.8% | 96.4% |
| 3684619 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 45.0 | 2.77e-01 | 100.0% | 92.7% |
| 3508437 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 43.0 | 2.74e-01 | 100.0% | 82.3% |