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NC_047990.1__YP_009802982.1__HOT44_gp21__00021

Bact-Vir

NC_047990.1__YP_009802982.1__HOT44_gp21__00021

Identity

Accession:
NC_047990 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Terapinvirus› Gordonia_phage_Suzy

TaxID: 2201430

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-58
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.78 62.0 5.13e-01 88.2% 50.0%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.77 54.0 4.80e-01 88.2% 52.8%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.72 47.0 3.84e-01 72.5% 36.8%
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.71 59.0 4.11e-01 100.0% 27.6%
1musA01 1.10.246.40 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Tn5 transposase; domain 1 0.70 54.0 5.02e-01 86.3% 69.7%
4g3vA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.70 52.0 3.70e-01 96.1% 25.9%
1oohA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.68 51.0 3.82e-01 88.2% 32.5%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.68 52.0 4.59e-01 82.4% 56.6%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.68 49.0 4.30e-01 78.4% 55.7%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.67 52.0 4.13e-01 84.3% 40.6%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 52.0 4.72e-01 84.3% 79.4%
3ayhA00 1.20.1250.40 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit 0.58 44.0 3.26e-01 82.4% 32.1%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.57 50.0 3.58e-01 100.0% 35.9%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 46.0 4.04e-01 96.1% 73.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963130 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.92 77.0 5.28e-01 90.2% 29.7%
3965610 3831.1.1.1 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.88 74.0 6.10e-01 90.2% 56.5%
2720280 3544.1.1.1 ↗ extended segments › Small envelope protein M › Small envelope protein M › Small envelope protein M › Flavi_M 0.82 56.0 5.73e-01 78.4% 74.0%
4034224 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.77 60.0 5.25e-01 84.3% 58.7%
4033046 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.76 58.0 5.15e-01 84.3% 58.7%
3969538 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 49.0 4.82e-01 76.5% 69.1%
3617903 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.69 51.0 4.34e-01 88.2% 46.7%
4034226 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.69 53.0 4.60e-01 84.3% 55.0%
3947140 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.69 60.0 4.62e-01 100.0% 54.2%
4031187 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.66 49.0 4.37e-01 88.2% 54.7%
2814929 150.1.1.14 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like 0.66 51.0 4.67e-01 84.3% 73.5%
3586032 605.1.1.237 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Patched 0.64 50.0 4.02e-01 86.3% 49.5%
3491670 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.64 51.0 5.00e-01 88.2% 83.6%
3959006 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.60 45.0 4.11e-01 82.4% 87.1%
3205500 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 42.0 2.82e-01 76.5% 35.6%
3960717 191.1.1.42 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_41 0.59 53.0 4.63e-01 100.0% 97.3%
4962160 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.58 44.0 3.02e-01 88.2% 91.9%