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NC_047997.1__YP_009803982.1__HOT51_gp01__00001

Bact-Vir

NC_047997.1__YP_009803982.1__HOT51_gp01__00001

Identity

Accession:
NC_047997 ↗
Kingdom:
phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Pfluvirus› Pseudomonas_phage_PFP1

TaxID: 2201462

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-138
PDB
Domain cluster: rep: NC_028850.1__YP_009203163.1__AVU16_gp07__00007__D5-127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23780.2 best S-AdoMet_lyase 103.6 1.10e-29 97.8% 99.2%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.69 49.0 5.49e-01 95.6% 95.3%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 5.09e-01 83.2% 98.1%
3w9iA06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.63 45.0 5.14e-01 81.8% 100.0%
2nyhA00 3.30.70.1240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains 0.61 45.0 4.88e-01 99.3% 91.4%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.82e-01 83.9% 100.0%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.59 26.0 3.71e-01 83.9% 88.9%
3v4mB00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 42.0 4.67e-01 100.0% 97.1%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.58 38.0 4.41e-01 92.0% 95.7%
2fgeA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 41.0 3.40e-01 75.9% 84.8%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 27.0 3.59e-01 75.9% 97.0%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 30.0 3.36e-01 79.6% 72.6%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 3.31e-01 94.2% 80.4%
3r8jA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 45.0 4.17e-01 100.0% 96.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4628567 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.71 52.0 5.61e-01 98.5% 89.6%
4248583 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.70 49.0 5.19e-01 82.5% 80.8%
4350044 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.70 48.0 5.53e-01 83.2% 96.0%
4109316 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.68 52.0 5.60e-01 97.1% 94.7%
4229727 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.68 48.0 4.85e-01 83.9% 71.4%
3916383 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.68 56.0 5.35e-01 95.6% 76.8%
4378200 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.68 49.0 5.19e-01 98.5% 85.0%
4017122 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.65 49.0 5.22e-01 96.4% 92.2%
3944258 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.63 28.0 3.28e-01 83.2% 57.0%
4486890 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.60 41.0 4.50e-01 97.1% 88.2%
4945789 304.48.1.110 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS_FLD 0.59 53.0 5.03e-01 97.8% 99.4%
4266983 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.59 52.0 4.88e-01 96.4% 98.8%
5009993 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 50.0 4.61e-01 95.6% 96.8%
None — 0.58 52.0 4.91e-01 97.8% 94.5%
4984977 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.58 51.0 4.93e-01 97.1% 100.0%
4957503 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.57 51.0 4.80e-01 97.8% 93.5%
4049544 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.57 50.0 4.70e-01 96.4% 94.1%
4939141 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 51.0 4.78e-01 97.8% 95.8%
4985745 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.57 51.0 4.77e-01 97.8% 95.8%
4495451 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.56 49.0 4.67e-01 96.4% 93.9%
4377632 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.56 50.0 5.06e-01 96.4% 100.0%
4410723 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.56 33.0 3.67e-01 79.6% 73.3%
3744424 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.55 41.0 3.57e-01 78.8% 82.3%
3690352 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 39.0 4.10e-01 87.6% 82.4%
3721754 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 39.0 4.13e-01 97.1% 85.8%
3785393 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 36.0 3.03e-01 89.8% 38.4%
3624917 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 38.0 4.03e-01 98.5% 85.8%
3494762 886.1.1.0 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain 0.52 47.0 4.39e-01 99.3% 86.5%
2625611 304.4.1.9 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase 0.52 40.0 4.23e-01 95.6% 91.9%
4671158 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 44.0 3.65e-01 97.8% 67.8%
3275597 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 45.0 3.70e-01 97.8% 69.4%
4682347 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 44.0 3.58e-01 97.1% 67.4%
3979051 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.50 42.0 3.44e-01 94.9% 89.8%
3992422 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 39.0 4.04e-01 81.0% 96.0%
4025700 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 35.0 3.82e-01 81.8% 89.1%
3638657 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.50 43.0 3.60e-01 97.8% 66.2%