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NC_048002.1__YP_009804619.1__HOT56_gp25__00025

Bact-Vir

NC_048002.1__YP_009804619.1__HOT56_gp25__00025

Identity

Accession:
NC_048002 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Foetvirus› Escherichia_phage_SRT7

TaxID: 2268589

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-48
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26857.1 best Phage_T7_4_7 43.3 6.30e-11 100.0% 32.8%
D2 high residues 69-124
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.84 63.0 6.49e-01 100.0% 83.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 72.0 7.16e-01 96.4% 91.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.97e-01 92.9% 83.9%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 5.97e-01 94.6% 92.0%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.75 68.0 5.55e-01 98.2% 86.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.80e-01 100.0% 78.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 60.0 6.08e-01 100.0% 94.4%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 64.0 4.95e-01 98.2% 50.4%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.71 60.0 4.93e-01 91.1% 62.9%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 62.0 5.25e-01 98.2% 82.2%
1okjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 50.0 4.27e-01 80.4% 76.8%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 4.92e-01 94.6% 70.2%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 51.0 4.44e-01 87.5% 96.7%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.64 47.0 4.41e-01 78.6% 71.0%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.62 51.0 5.08e-01 96.4% 94.8%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 3.78e-01 83.9% 51.2%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 3.78e-01 85.7% 94.4%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 45.0 3.30e-01 83.9% 75.0%
3m7nA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.84e-01 82.1% 94.2%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.58 43.0 3.86e-01 82.1% 66.3%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 41.0 3.41e-01 82.1% 85.7%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.73e-01 89.3% 90.4%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 42.0 3.62e-01 80.4% 90.2%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.54e-01 76.8% 93.3%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.28e-01 83.9% 37.8%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 44.0 3.42e-01 85.7% 57.6%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 43.0 3.24e-01 85.7% 94.1%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 39.0 2.70e-01 75.0% 27.4%
6r2nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 3.17e-01 80.4% 94.3%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 37.0 2.79e-01 80.4% 25.8%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 38.0 2.59e-01 73.2% 26.5%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.25e-01 85.7% 82.6%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.55 40.0 3.42e-01 85.7% 95.5%
2w3xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 45.0 3.44e-01 96.4% 95.1%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 45.0 3.77e-01 98.2% 96.2%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.53 46.0 3.77e-01 100.0% 93.6%
4jdeA01 2.60.40.3820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.24e-01 91.1% 86.9%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.53 43.0 3.20e-01 98.2% 67.5%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.00e-01 92.9% 89.8%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 36.0 2.53e-01 75.0% 26.5%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 37.0 2.16e-01 78.6% 10.7%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 37.0 2.91e-01 83.9% 85.1%
2oplA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 35.0 2.68e-01 80.4% 81.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.83 61.0 6.43e-01 91.1% 88.0%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.82 69.0 5.63e-01 100.0% 52.6%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.79 68.0 6.44e-01 96.4% 78.5%
4655719 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 68.0 5.73e-01 92.9% 70.0%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 62.0 5.71e-01 83.9% 85.7%
4403216 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.78 63.0 5.85e-01 96.4% 70.0%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.78 63.0 5.66e-01 96.4% 65.3%
3476336 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.77 71.0 6.56e-01 100.0% 91.4%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 6.21e-01 100.0% 92.7%
3712672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.62e-01 94.6% 96.2%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 64.0 5.90e-01 94.6% 88.6%
3979903 4.1.1.465 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_6, SH3_7 0.74 69.0 4.24e-01 100.0% 30.2%
4555816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.51e-01 98.2% 70.6%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 64.0 6.10e-01 94.6% 84.6%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 62.0 5.09e-01 94.6% 63.6%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.76e-01 92.9% 92.3%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 62.0 5.24e-01 94.6% 81.1%
3761319 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.72 61.0 5.79e-01 92.9% 92.3%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.71 63.0 5.27e-01 100.0% 85.3%
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 59.0 5.28e-01 98.2% 72.9%
4137471 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 53.0 4.29e-01 82.1% 64.5%
4932493 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.97e-01 100.0% 87.7%
4304846 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.70 65.0 5.22e-01 100.0% 70.0%
4185827 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 51.0 4.17e-01 80.4% 63.6%
3375181 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.69 64.0 4.60e-01 100.0% 48.3%
3473407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.63e-01 100.0% 85.3%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 57.0 5.15e-01 96.4% 76.2%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.68 59.0 5.46e-01 96.4% 82.9%
3981575 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.58e-01 98.2% 90.9%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.18e-01 100.0% 83.5%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 61.0 5.64e-01 100.0% 80.0%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.33e-01 100.0% 85.1%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.14e-01 92.9% 76.9%
3208004 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 51.0 2.87e-01 87.5% 18.3%
3611306 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 46.0 3.19e-01 80.4% 71.0%
3798461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.08e-01 92.9% 70.0%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.65e-01 98.2% 88.2%
185990 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.61 42.0 3.37e-01 83.9% 36.3%
3500426 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.59 44.0 2.78e-01 85.7% 35.3%
3595489 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 49.0 4.78e-01 89.3% 88.3%
2388236 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.58 43.0 3.01e-01 82.1% 94.4%
5060723 5.1.9.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain in ABC toxin B component › FG-GAP_3 0.57 44.0 2.69e-01 87.5% 22.2%
999030 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.57 40.0 3.35e-01 83.9% 40.8%
3761570 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.56 40.0 3.25e-01 78.6% 49.6%
3707978 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.56 38.0 2.74e-01 75.0% 46.2%
3918990 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.39e-01 87.5% 7.6%
3411613 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.78e-01 100.0% 14.5%
3721314 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.53 43.0 3.53e-01 96.4% 81.7%
3486056 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.04e-01 85.7% 35.1%
3193761 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.53 41.0 2.89e-01 92.9% 90.0%
3875861 5.1.4.146 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.64e-01 100.0% 55.4%
3591052 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.85e-01 85.7% 76.9%
3173222 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.52 40.0 3.36e-01 91.1% 94.8%
3275994 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.52 38.0 3.15e-01 87.5% 79.7%
3757004 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.14e-01 76.8% 50.7%
3616043 216.1.1.19 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med14_RM6 0.51 39.0 2.88e-01 83.9% 32.0%
3744268 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.50 41.0 3.26e-01 100.0% 94.1%