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NC_048015.1__YP_009806340.1__HOT69_gp184__00083

Bact-Vir

NC_048015.1__YP_009806340.1__HOT69_gp184__00083

Identity

Accession:
NC_048015 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Thaumasvirus› Cyanophage_S-TIM4

TaxID: 1048189

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-85
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.72 59.0 5.18e-01 92.6% 92.7%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.67 52.0 4.26e-01 85.2% 100.0%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 56.0 4.96e-01 98.1% 71.1%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 55.0 4.71e-01 100.0% 75.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 53.0 3.90e-01 98.1% 95.2%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.65 50.0 4.00e-01 85.2% 88.1%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 48.0 4.66e-01 85.2% 77.0%
1evlA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 42.0 3.36e-01 70.4% 42.9%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 55.0 4.03e-01 98.1% 56.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.61 50.0 4.62e-01 98.1% 82.9%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.20e-01 98.1% 64.9%
3nznA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 45.0 3.67e-01 79.6% 48.5%
7jz1H02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.42e-01 98.1% 68.1%
2hh8A00 3.30.1810.10 Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like 0.60 45.0 3.39e-01 79.6% 75.6%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 4.22e-01 96.3% 62.2%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.59 50.0 3.82e-01 98.1% 90.2%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 49.0 3.65e-01 98.1% 70.2%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 44.0 3.45e-01 87.0% 83.5%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.58 47.0 3.89e-01 96.3% 82.0%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 47.0 4.02e-01 100.0% 85.4%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 40.0 2.92e-01 75.9% 97.1%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.58 48.0 3.98e-01 96.3% 62.1%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.21e-01 98.1% 64.8%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 40.0 3.12e-01 75.9% 63.0%
1d3yB02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.57 46.0 3.16e-01 94.4% 58.1%
1z5yE00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 42.0 3.23e-01 83.3% 41.9%
6p0wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 42.0 3.30e-01 85.2% 50.4%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.56 47.0 3.59e-01 100.0% 59.4%
7k7jA02 2.60.40.1770 Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain 0.56 39.0 3.77e-01 100.0% 64.5%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.78e-01 100.0% 84.7%
4fd5A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 47.0 3.23e-01 100.0% 88.4%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 37.0 2.69e-01 70.4% 25.6%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.90e-01 100.0% 66.3%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 3.63e-01 98.1% 82.3%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 45.0 3.45e-01 100.0% 78.9%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 3.10e-01 83.3% 35.5%
3qb8A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 3.07e-01 100.0% 88.8%
1z6nA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 38.0 2.74e-01 75.9% 51.8%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 2.82e-01 96.3% 78.0%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.53 41.0 3.71e-01 88.9% 70.5%
3fkfD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.02e-01 85.2% 46.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 43.0 3.72e-01 98.1% 98.9%
5gi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 2.90e-01 100.0% 89.5%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 43.0 3.38e-01 94.4% 61.7%
2ju5A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 45.0 3.41e-01 100.0% 75.0%
3erwF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 45.0 3.37e-01 100.0% 76.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.80 70.0 6.82e-01 98.1% 100.0%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.78 59.0 5.29e-01 81.5% 98.7%
3893811 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 65.0 5.33e-01 96.3% 84.0%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.75 50.0 5.35e-01 70.4% 82.2%
2579422 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.74 63.0 5.32e-01 98.1% 84.0%
3963812 3170.1.1.0 ↗ a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 0.72 58.0 4.55e-01 96.3% 42.7%
3686690 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.72 62.0 5.39e-01 98.1% 98.8%
3723377 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.72 62.0 4.74e-01 98.1% 67.2%
3611020 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 60.0 4.12e-01 98.1% 31.7%
3200703 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.71 62.0 5.39e-01 100.0% 100.0%
3969097 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.69 47.0 4.90e-01 70.4% 76.0%
None — 0.69 58.0 4.86e-01 96.3% 89.5%
4315538 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.67 51.0 3.79e-01 85.2% 50.3%
4028488 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.65 55.0 4.19e-01 100.0% 44.3%
3705856 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.65 56.0 3.52e-01 100.0% 42.0%
3497622 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.64 48.0 4.49e-01 87.0% 64.3%
5035961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 4.25e-01 98.1% 60.0%
3438124 2485.1.1.87 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.64 43.0 3.27e-01 70.4% 30.0%
3505715 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.64 49.0 4.39e-01 87.0% 93.8%
5051489 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 48.0 3.52e-01 83.3% 98.7%
4283762 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.63 56.0 4.40e-01 98.1% 65.5%
5083825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 56.0 4.14e-01 98.1% 77.0%
4994058 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 55.0 4.28e-01 98.1% 55.9%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 47.0 4.91e-01 83.3% 96.0%
3907174 11.1.6.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA_SH3BP4 0.63 56.0 4.04e-01 98.1% 49.0%
5001166 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.63 46.0 3.62e-01 85.2% 34.1%
3911204 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.62 48.0 4.40e-01 88.9% 72.0%
3714128 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 43.0 4.15e-01 83.3% 63.1%
4930766 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 50.0 3.93e-01 100.0% 48.9%
3919835 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 52.0 3.86e-01 98.1% 54.3%
5047755 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.60 48.0 3.77e-01 100.0% 51.4%
5048556 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.02e-01 98.1% 50.0%
3735977 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.58 51.0 4.08e-01 98.1% 66.7%
3943293 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.58 47.0 3.15e-01 94.4% 88.4%
11217 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.58 48.0 3.76e-01 98.1% 76.6%
3501103 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.58 47.0 4.55e-01 96.3% 84.1%
3387312 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.58 45.0 3.61e-01 100.0% 46.4%
3974138 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.56 48.0 3.49e-01 100.0% 67.9%
4014792 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.56 42.0 3.59e-01 87.0% 48.4%
3618241 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 41.0 3.43e-01 83.3% 81.0%
150994 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 47.0 3.23e-01 100.0% 88.4%
3295513 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.55 45.0 3.07e-01 98.1% 84.1%
5019615 213.1.1.26 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_4 0.55 47.0 3.43e-01 100.0% 84.0%
3224684 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.55 45.0 2.89e-01 98.1% 20.6%
3495458 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.96e-01 98.1% 72.2%
4599953 3292.1.1.0 ↗ a+b complex topology › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain 0.54 45.0 3.18e-01 100.0% 47.8%
3937926 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 4.17e-01 98.1% 66.3%
3587193 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.53 40.0 3.00e-01 81.5% 80.0%
4099546 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.53 40.0 2.96e-01 88.9% 92.0%
3641308 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.53 47.0 3.63e-01 100.0% 64.2%
5008209 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.76e-01 100.0% 67.5%
3388487 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 39.0 2.84e-01 100.0% 85.9%
3724883 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.51 37.0 2.58e-01 85.2% 20.5%
3723416 212.1.1.12 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.51 40.0 3.17e-01 98.1% 60.9%
5035267 2485.1.1.38 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.50 46.0 3.71e-01 100.0% 74.5%