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NC_048015.1__YP_009806342.1__HOT69_gp182__00085
Bact-VirNC_048015.1__YP_009806342.1__HOT69_gp182__00085
Identity
- Accession:
- NC_048015 ↗
- Kingdom:
- phage
Quality
95.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Thaumasvirus›
Cyanophage_S-TIM4
TaxID: 1048189
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-50
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.89 | 80.0 | 5.50e-01 | 100.0% | 32.6% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.89 | 63.0 | 6.01e-01 | 84.8% | 64.8% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.87 | 78.0 | 7.56e-01 | 100.0% | 92.2% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.86 | 76.0 | 6.88e-01 | 100.0% | 73.0% |
| 2fjcB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.86 | 77.0 | 5.21e-01 | 100.0% | 30.1% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.85 | 75.0 | 6.24e-01 | 97.8% | 59.7% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 73.0 | 6.42e-01 | 100.0% | 68.1% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 63.0 | 6.48e-01 | 82.6% | 86.4% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.83 | 72.0 | 5.64e-01 | 100.0% | 71.4% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 72.0 | 6.22e-01 | 100.0% | 68.5% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 70.0 | 6.27e-01 | 97.8% | 80.0% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.81 | 66.0 | 6.02e-01 | 91.3% | 68.9% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.80 | 67.0 | 5.58e-01 | 100.0% | 73.3% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.79 | 66.0 | 6.33e-01 | 100.0% | 82.7% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.79 | 67.0 | 5.60e-01 | 100.0% | 60.0% |
| 2g38B00 | 1.20.1260.20 | Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily | 0.79 | 68.0 | 4.61e-01 | 100.0% | 28.9% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.79 | 61.0 | 4.99e-01 | 84.8% | 58.3% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 67.0 | 5.90e-01 | 100.0% | 69.0% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.78 | 63.0 | 4.50e-01 | 91.3% | 30.0% |
| 5dn6J00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.78 | 68.0 | 5.84e-01 | 100.0% | 87.8% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 60.0 | 5.55e-01 | 100.0% | 67.2% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.76 | 62.0 | 6.03e-01 | 95.7% | 82.7% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 63.0 | 4.96e-01 | 100.0% | 44.9% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 60.0 | 5.67e-01 | 100.0% | 81.7% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 56.0 | 5.58e-01 | 100.0% | 85.7% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.73 | 60.0 | 5.53e-01 | 100.0% | 76.6% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.72 | 57.0 | 5.24e-01 | 95.7% | 69.2% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.72 | 59.0 | 5.53e-01 | 100.0% | 77.0% |
| 4wesB03 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.72 | 57.0 | 4.83e-01 | 89.1% | 53.2% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.72 | 58.0 | 4.91e-01 | 100.0% | 53.7% |
| 1ucuA01 | 6.10.280.190 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 58.0 | 5.27e-01 | 100.0% | 69.1% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 58.0 | 5.14e-01 | 100.0% | 63.5% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 57.0 | 5.05e-01 | 100.0% | 64.0% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.70 | 60.0 | 4.30e-01 | 100.0% | 64.5% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 53.0 | 5.20e-01 | 100.0% | 82.5% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.66 | 50.0 | 4.09e-01 | 93.5% | 44.8% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.66 | 52.0 | 4.99e-01 | 100.0% | 81.0% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.61 | 47.0 | 3.59e-01 | 95.7% | 34.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5006936 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.92 | 77.0 | 6.77e-01 | 100.0% | 64.6% |
| 5045370 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.90 | 83.0 | 7.48e-01 | 100.0% | 76.7% |
| 3683909 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.89 | 82.0 | 5.89e-01 | 100.0% | 38.7% |
| 4459514 | 2002.1.1.219 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn | 0.88 | 78.0 | 4.41e-01 | 95.7% | 10.6% |
| 5011468 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.87 | 79.0 | 5.64e-01 | 100.0% | 36.8% |
| 3377481 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.87 | 79.0 | 7.16e-01 | 100.0% | 86.7% |
| 3287020 | 3997.1.1.1 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.80 | 67.0 | 4.32e-01 | 93.5% | 21.5% |
| 3959854 | 3997.1.1.0 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit | 0.79 | 66.0 | 4.32e-01 | 93.5% | 22.6% |
| 4987541 | 611.8.1.0 ↗ | alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 | 0.76 | 65.0 | 4.96e-01 | 100.0% | 41.8% |
| 5043558 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.75 | 62.0 | 5.49e-01 | 100.0% | 63.5% |
| 4276514 | 3826.1.1.88 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › CC_BshC | 0.71 | 60.0 | 5.32e-01 | 100.0% | 67.1% |
| 3944240 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.70 | 57.0 | 4.80e-01 | 100.0% | 52.2% |
| 5018020 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.69 | 54.0 | 5.29e-01 | 91.3% | 82.0% |