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NC_048016.1__YP_009806717.1__HOT70_gp068__00225

Bact-Vir

NC_048016.1__YP_009806717.1__HOT70_gp068__00225

Identity

Accession:
NC_048016 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Wellingtonvirus› Erwinia_phage_Wellington

TaxID: 2267653

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-144
PDB
Domain cluster: rep: MH221128.1__AWN08819.1__STsAS_178__00024__D2-141
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.70 43.0 5.23e-01 86.0% 96.7%
1cpcA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.60 45.0 4.30e-01 92.3% 67.9%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 34.0 3.71e-01 76.9% 67.2%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.59 37.0 4.41e-01 76.2% 93.8%
3rmgA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 42.0 3.40e-01 78.3% 53.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 30.0 3.84e-01 98.6% 89.4%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.55 48.0 4.56e-01 97.2% 99.4%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 41.0 4.53e-01 98.6% 98.3%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.55 41.0 3.96e-01 95.1% 68.9%
1zklA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.55 46.0 3.62e-01 93.0% 74.1%
8f76A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 46.0 3.62e-01 90.2% 58.0%
1werA01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.54 41.0 3.91e-01 81.1% 86.9%
2fji102 1.10.357.70 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain 0.54 38.0 3.44e-01 70.6% 83.2%
3b9wA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.54 48.0 3.65e-01 100.0% 88.1%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.54 31.0 3.33e-01 79.0% 64.3%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 25.0 3.36e-01 77.6% 81.0%
5l92A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 48.0 3.54e-01 99.3% 71.5%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.52 40.0 3.70e-01 83.2% 61.5%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.52 38.0 3.65e-01 76.2% 90.4%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.51 38.0 3.60e-01 76.2% 90.5%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 39.0 3.93e-01 89.5% 78.5%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.51 36.0 4.11e-01 86.7% 98.1%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2832675 2006.1.4.8 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.69 45.0 3.96e-01 95.8% 45.4%
5029827 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.65 51.0 4.47e-01 82.5% 73.7%
3252801 5001.1.1.53 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › LMBR1 0.64 48.0 3.70e-01 78.3% 82.8%
4032765 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.63 41.0 4.54e-01 94.4% 81.7%
3961693 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.63 46.0 4.51e-01 88.1% 68.1%
5059032 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.62 51.0 4.57e-01 86.0% 86.7%
4979934 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.61 47.0 4.91e-01 81.1% 90.8%
3638123 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.61 43.0 4.63e-01 73.4% 90.4%
4541657 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.61 34.0 4.38e-01 93.7% 97.5%
3640652 5054.1.1.12 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › NCA2 0.59 44.0 3.96e-01 100.0% 57.9%
5024991 5073.1.1.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.58 50.0 3.80e-01 93.7% 82.1%
3708129 603.5.1.0 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like 0.56 41.0 4.07e-01 75.5% 80.0%
3955107 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.56 44.0 4.35e-01 94.4% 78.1%
4020943 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.55 40.0 3.39e-01 75.5% 96.7%
3919099 621.1.1.8 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 0.55 39.0 4.03e-01 72.0% 90.4%
4963777 604.12.1.137 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF373 0.54 39.0 3.93e-01 74.8% 83.3%
3894123 148.1.3.56 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Arv1 0.54 47.0 4.24e-01 97.9% 69.5%
3501477 1075.1.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.54 48.0 3.84e-01 95.1% 61.1%
3491114 101.1.10.6 ↗ alpha arrays › HTH › HTH › Cyclin-like › RB_A 0.54 45.0 3.82e-01 89.5% 66.8%
4438752 3563.1.1.1 ↗ alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.53 48.0 4.11e-01 100.0% 62.6%
4362095 1073.1.1.42 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › EVC2_like 0.52 41.0 3.65e-01 83.2% 82.9%
3234565 5001.1.1.84 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz 0.52 45.0 3.38e-01 90.9% 60.3%
3179691 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 43.0 3.67e-01 90.2% 58.4%
3602461 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.52 36.0 2.69e-01 72.0% 26.0%
3929000 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 41.0 3.51e-01 85.3% 75.8%
3208058 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.52 45.0 3.60e-01 97.9% 96.1%
3932082 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 41.0 3.58e-01 83.2% 55.8%
4996299 5073.1.1.11 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C 0.51 46.0 3.40e-01 100.0% 71.8%
5040042 3861.1.1.0 ↗ alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) 0.51 40.0 4.12e-01 95.1% 85.9%
3926335 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 41.0 3.57e-01 85.3% 82.7%
3939129 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 40.0 3.50e-01 83.2% 55.8%
4243427 3560.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.50 28.0 2.72e-01 75.5% 48.1%
5054069 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 38.0 3.83e-01 77.6% 82.9%
4933803 3542.1.1.0 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases 0.50 39.0 3.14e-01 95.1% 42.1%
D2 medium residues 156-245
PDB
Domain cluster: rep: NC_031043.1__YP_009283690.1__BIZ79_gp201__00201__D167-257
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.61 39.0 4.26e-01 70.0% 77.3%
4ir8B02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.56 39.0 3.44e-01 71.1% 75.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3518462 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 32.0 3.37e-01 100.0% 52.5%
3597108 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 42.0 4.26e-01 70.0% 88.9%
1937525 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.56 40.0 3.64e-01 75.6% 89.6%
3661214 2003.1.1.135 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Castor_Poll_mid 0.51 42.0 2.68e-01 95.6% 80.0%