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NC_048016.1__YP_009806718.1__HOT70_gp067__00226

Bact-Vir

NC_048016.1__YP_009806718.1__HOT70_gp067__00226

Identity

Accession:
NC_048016 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-143
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fsfB04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.60 34.0 3.00e-01 98.6% 36.3%
1nu7D01 1.20.120.750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 0.56 36.0 3.73e-01 100.0% 67.4%
3zukA02 1.10.1380.10 Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 0.50 37.0 2.82e-01 75.4% 39.5%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 36.0 3.32e-01 74.6% 78.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4011767 3711.1.1.14 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Tim17 0.64 50.0 4.74e-01 83.1% 74.1%
3992989 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.62 40.0 4.00e-01 99.3% 62.0%
4031585 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.58 52.0 4.32e-01 98.6% 71.4%
2886939 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.58 44.0 3.41e-01 78.9% 86.9%
3963134 605.4.1.4 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.57 34.0 3.92e-01 80.3% 80.0%
3196983 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.55 43.0 3.62e-01 83.1% 52.7%
3479129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 38.0 3.17e-01 71.1% 92.2%
3601722 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.53 46.0 3.42e-01 98.6% 80.7%
3174956 3755.3.1.481 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30554 0.53 34.0 3.02e-01 97.2% 43.3%
4271561 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.52 39.0 3.38e-01 79.6% 77.8%
3945729 604.32.1.0 alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.52 32.0 3.32e-01 97.2% 64.6%
3739922 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 36.0 3.64e-01 79.6% 70.3%
3581959 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 37.0 3.20e-01 85.2% 46.7%
3827313 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.51 34.0 3.73e-01 78.2% 84.5%
3603563 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.51 45.0 3.36e-01 96.5% 53.7%
D2 high residues 167-236
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 54.0 4.19e-01 92.9% 59.4%
2kl0A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.62 47.0 4.72e-01 84.3% 90.4%
3tw6C01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 46.0 2.88e-01 90.0% 66.7%
2xzmH02 3.30.1490.10 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 44.0 4.61e-01 91.4% 95.1%
3e97A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.83e-01 98.6% 76.4%
1f46B00 3.30.1400.10 Alpha Beta › 2-Layer Sandwich › Cell Division Protein Zipa; Chain: A, › ZipA, C-terminal FtsZ-binding domain 0.55 43.0 3.59e-01 90.0% 59.3%
1um1A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 43.0 3.83e-01 90.0% 84.5%
2bkoA02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.54 38.0 3.70e-01 75.7% 70.4%
2aefA03 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.54 40.0 3.90e-01 81.4% 75.9%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 40.0 3.75e-01 84.3% 93.6%
2d1cA02 3.30.70.1570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.71e-01 90.0% 60.4%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.68e-01 100.0% 83.8%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.37e-01 91.4% 69.2%
5f29B00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.52 38.0 3.88e-01 84.3% 81.7%
4xttA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.52 41.0 3.93e-01 91.4% 85.9%
3wo4C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.55e-01 81.4% 82.4%
3jxoA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.51 39.0 3.71e-01 84.3% 82.1%
5o5iA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.59e-01 82.9% 84.8%
4g65B02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.51 39.0 3.66e-01 87.1% 76.1%
1dhiA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.51 34.0 2.69e-01 70.0% 48.4%
7agvB01 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.51 38.0 3.72e-01 84.3% 86.4%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.51 35.0 2.76e-01 74.3% 60.8%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.50 39.0 2.73e-01 91.4% 26.6%
3of1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 41.0 3.50e-01 100.0% 75.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935756 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 48.0 5.48e-01 71.4% 100.0%
5016589 3325.1.1.1 a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.61 47.0 4.10e-01 91.4% 53.0%
3242859 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 44.0 4.46e-01 78.6% 100.0%
3233697 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.59 48.0 3.43e-01 92.9% 57.4%
4962271 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.59 43.0 4.01e-01 78.6% 64.4%
3387505 3325.1.1.1 a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.58 47.0 3.96e-01 91.4% 56.0%
4331294 3325.1.1.1 a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.58 47.0 4.03e-01 92.9% 60.0%
4930415 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.58 43.0 4.05e-01 82.9% 84.4%
3174022 221.1.2.0 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.57 45.0 4.32e-01 88.6% 90.6%
3514075 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.57 38.0 3.87e-01 78.6% 71.4%
3397881 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 43.0 4.00e-01 85.7% 66.3%
154618 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 43.0 3.99e-01 84.3% 74.4%
3830368 4261.1.1.3 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › Castor_Poll_mid 0.56 42.0 3.94e-01 84.3% 70.0%
4585642 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 42.0 4.05e-01 84.3% 82.5%
4949156 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 40.0 3.97e-01 78.6% 77.3%
4458862 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.55 39.0 3.99e-01 75.7% 80.0%
4930417 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 41.0 4.19e-01 81.4% 81.4%
4954844 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 40.0 3.81e-01 78.6% 69.4%
3392941 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.63e-01 77.1% 88.4%
5041728 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 38.0 3.87e-01 74.3% 92.9%
4985451 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 41.0 4.06e-01 82.9% 84.0%
4963255 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.55 39.0 4.00e-01 78.6% 82.9%
4368852 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 40.0 3.73e-01 80.0% 65.6%
289424 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 41.0 3.70e-01 82.9% 66.7%
4610512 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 39.0 3.76e-01 78.6% 68.2%
4938929 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 42.0 3.91e-01 85.7% 82.2%
5044721 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 39.0 3.90e-01 80.0% 78.7%
4935675 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 39.0 3.63e-01 77.1% 64.4%
4054166 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 40.0 3.91e-01 82.9% 77.5%
4981785 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 41.0 3.92e-01 85.7% 82.4%
4958917 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 40.0 3.90e-01 82.9% 75.0%
5000853 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 40.0 3.78e-01 81.4% 70.6%
4218044 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.54 39.0 3.72e-01 81.4% 66.7%
5050797 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.54 38.0 3.55e-01 75.7% 64.4%
4981783 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.53 41.0 3.89e-01 87.1% 87.6%
4004198 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.53 43.0 4.17e-01 92.9% 97.5%
4942897 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.53 39.0 3.69e-01 78.6% 67.1%
4969956 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.53 40.0 3.84e-01 84.3% 83.5%
4988549 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.53 39.0 3.99e-01 81.4% 84.3%
4964378 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.53 41.0 3.99e-01 85.7% 83.7%
5020947 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.53 39.0 3.72e-01 81.4% 70.6%
4976783 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 38.0 3.66e-01 78.6% 68.2%
4240112 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 38.0 3.85e-01 80.0% 82.9%
5079172 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 38.0 3.61e-01 78.6% 68.2%
4938377 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 39.0 3.87e-01 81.4% 80.0%
4224412 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 39.0 3.60e-01 82.9% 62.1%
4413980 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.52 39.0 3.90e-01 84.3% 78.7%
5067208 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 38.0 3.61e-01 80.0% 69.4%
5044723 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 38.0 3.65e-01 78.6% 72.5%
5003836 2003.1.1.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N 0.51 38.0 2.68e-01 81.4% 24.0%
5027020 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 37.0 3.75e-01 77.1% 81.4%
5067701 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 39.0 3.79e-01 85.7% 84.8%
5042240 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 39.0 3.83e-01 88.6% 85.0%
3287772 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 38.0 3.53e-01 84.3% 69.5%
4966995 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 39.0 3.67e-01 85.7% 74.4%
4190640 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 40.0 3.68e-01 88.6% 83.2%
5020951 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 37.0 3.58e-01 81.4% 70.6%
5007604 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.51 37.0 3.77e-01 80.0% 81.4%
5027022 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.50 37.0 3.59e-01 81.4% 75.0%
3989977 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.50 38.0 3.68e-01 87.1% 81.2%