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NC_048016.1__YP_009806734.1__HOT70_gp051__00242

Bact-Vir

Identity

Accession:: NC_048016 ↗
Kingdom:: phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Wellingtonvirus› Erwinia_phage_Wellington

TaxID: 2267653

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-121_139-264

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bxoA02	2.20.130.10	Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains	0.82	23.0	3.91e-01	100.0%	67.8%
1jkfA03	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.70	21.0	3.35e-01	100.0%	65.0%
5irbA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.69	31.0	3.65e-01	100.0%	60.6%
3zoqC00	6.20.250.30	Special › Other non-globular › Double Stranded RNA Binding Domain ›	0.66	24.0	3.98e-01	92.5%	92.5%
6x5vA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.66	29.0	3.63e-01	100.0%	64.6%
4rs1B02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.64	30.0	3.56e-01	100.0%	63.1%
2d42A02	3.10.450.380	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.63	20.0	3.01e-01	100.0%	61.5%
1gr0A02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.57	26.0	3.37e-01	100.0%	75.0%
1jx4A04	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.56	25.0	3.04e-01	88.4%	62.2%
2g8lB01	1.10.8.380	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1	0.54	26.0	3.75e-01	74.1%	100.0%
5l3wA01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.53	27.0	3.44e-01	77.6%	82.1%
8egxA04	2.60.40.60	Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins	0.52	24.0	2.81e-01	98.6%	58.4%
3n8bA00	3.10.450.700	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	20.0	2.91e-01	91.2%	74.7%
3cinA02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.51	30.0	3.51e-01	99.3%	81.7%
6k96B02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.51	27.0	3.29e-01	100.0%	78.4%
3ijfX00	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.51	32.0	3.45e-01	100.0%	74.0%
2fr5A00	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.51	33.0	3.45e-01	100.0%	70.6%
7sz8A01	2.60.40.60	Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins	0.51	24.0	2.88e-01	100.0%	62.6%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4299507	3256.1.1.2 ↗	a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g	0.64	18.0	3.47e-01	99.3%	100.0%
3323289	319.1.1.1 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20	0.63	20.0	2.91e-01	100.0%	57.1%
3847745	11.1.1.462 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › REJ	0.62	31.0	3.51e-01	100.0%	62.7%
3588402	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	28.0	3.18e-01	99.3%	60.0%
5047945	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.51	36.0	2.49e-01	70.7%	94.3%
3413079	11.1.1.550 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3	0.51	29.0	2.40e-01	100.0%	30.7%
3267306	230.1.1.4 ↗	a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB	0.51	32.0	3.43e-01	100.0%	72.8%

D2 medium residues 1-100_122-138

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4955523	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.54	39.0	3.98e-01	76.1%	85.2%
4996540	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.52	29.0	3.38e-01	70.9%	76.5%