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NC_048016.1__YP_009806773.1__HOT70_gp012__00281

Bact-Vir

NC_048016.1__YP_009806773.1__HOT70_gp012__00281

Identity

Accession:
NC_048016 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Wellingtonvirus› Erwinia_phage_Wellington

TaxID: 2267653

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-92
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.62 44.0 4.39e-01 75.3% 88.7%
1sxjE02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 39.0 4.14e-01 74.0% 93.8%
1txgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 39.0 3.22e-01 77.9% 96.1%
3p0hB02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 42.0 2.83e-01 83.1% 43.5%
7watB02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 40.0 2.73e-01 81.8% 91.8%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 38.0 3.64e-01 79.2% 100.0%
5tk8A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.50 42.0 3.26e-01 97.4% 57.1%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.50 31.0 3.22e-01 100.0% 64.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4359859 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.65 41.0 4.89e-01 71.4% 100.0%
5028151 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 41.0 4.02e-01 80.5% 61.2%
4423693 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.62 39.0 4.38e-01 70.1% 87.3%
4959119 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.61 45.0 4.51e-01 80.5% 92.5%
5013255 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.61 44.0 4.57e-01 77.9% 97.1%
3269505 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.60 43.0 4.01e-01 77.9% 81.0%
5003599 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.59 42.0 4.38e-01 76.6% 97.1%
4950862 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.58 41.0 4.38e-01 75.3% 98.5%
4604080 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.57 40.0 4.28e-01 75.3% 98.5%
3330039 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 3.48e-01 72.7% 57.6%
3643664 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 33.0 3.35e-01 80.5% 58.7%
4626438 70.3.1.19 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF27829 0.56 47.0 3.29e-01 96.1% 79.3%
3822810 1128.1.1.13 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.55 41.0 3.80e-01 80.5% 82.0%
3805676 1128.1.1.13 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.55 42.0 4.04e-01 84.4% 86.7%
3216703 103.1.1.142 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_Sid-3 0.54 40.0 4.09e-01 84.4% 81.3%
3571998 1177.1.1.2 ↗ few secondary structure elements › lybatide 2 › lybatide 2 › lybatide 2 › PLAC8 0.54 39.0 4.21e-01 92.2% 90.8%
3859287 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.54 41.0 4.05e-01 93.5% 77.5%
3817553 3684.1.1.49 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PF30094 0.51 38.0 3.54e-01 81.8% 74.3%
D2 medium residues 93-167
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 42.0 2.78e-01 76.0% 65.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3769040 101.1.2.537 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28339 0.60 46.0 4.39e-01 84.0% 72.2%
4929638 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.53 38.0 3.95e-01 82.7% 81.4%
5028744 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.52 38.0 3.61e-01 84.0% 64.4%
4982942 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.52 38.0 3.48e-01 84.0% 58.0%
3166997 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 36.0 2.63e-01 76.0% 75.0%
4934946 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.51 37.0 3.63e-01 84.0% 72.5%
3831826 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.50 37.0 3.65e-01 84.0% 73.8%
4932760 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.50 36.0 3.67e-01 82.7% 77.3%