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NC_048022.1__YP_009807319.1__HOT76_gp40__00040
Bact-VirNC_048022.1__YP_009807319.1__HOT76_gp40__00040
Identity
- Accession:
- NC_048022 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Taxonomy
TaxID: 2283015
Cluster
View cluster (31 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 87-247
Domain cluster:
rep: MN794238.1__QHJ74670.1__VH22019_00106__00106__D45-191
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01695.24 best | IstB_IS21 | 31.0 | 2.60e-07 | 98.8% | 45.4% |
| PF00910.29 | RNA_helicase | 23.4 | 9.90e-05 | 66.5% | 71.4% |
D2
medium
residues 3-53
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rkxA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.65 | 54.0 | 3.71e-01 | 100.0% | 30.0% |
| 1hxdA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 54.0 | 3.71e-01 | 100.0% | 30.5% |
| 2e5aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 54.0 | 3.55e-01 | 100.0% | 24.2% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 39.0 | 4.13e-01 | 94.1% | 97.4% |
| 1x6mC00 | 3.90.1590.10 | Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) | 0.54 | 43.0 | 2.92e-01 | 86.3% | 26.8% |
| 4bf2A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 39.0 | 2.75e-01 | 100.0% | 23.3% |
| 3u4qA02 | 1.10.274.50 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.52 | 39.0 | 2.93e-01 | 88.2% | 71.3% |
| 4kdcA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 2.88e-01 | 100.0% | 84.8% |
| 1qlmA02 | 3.30.1030.10 | Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 | 0.51 | 41.0 | 2.90e-01 | 100.0% | 56.6% |
| 4f80A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.11e-01 | 80.4% | 77.4% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 34.0 | 3.34e-01 | 88.2% | 63.2% |
| 2sliA03 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.50 | 39.0 | 3.30e-01 | 94.1% | 92.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017466 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.66 | 56.0 | 3.74e-01 | 100.0% | 25.9% |
| 3714168 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.66 | 56.0 | 3.43e-01 | 100.0% | 17.1% |
| 7026 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.66 | 55.0 | 3.88e-01 | 100.0% | 30.8% |
| 4953222 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.66 | 56.0 | 3.77e-01 | 100.0% | 28.6% |
| 3880852 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.66 | 38.0 | 4.02e-01 | 76.5% | 62.2% |
| 3246047 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.65 | 55.0 | 3.54e-01 | 100.0% | 21.6% |
| 3700581 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.65 | 55.0 | 3.40e-01 | 100.0% | 18.4% |
| 3610060 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.65 | 42.0 | 3.56e-01 | 86.3% | 38.8% |
| 3741755 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.65 | 55.0 | 3.52e-01 | 100.0% | 21.1% |
| 3520763 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 49.0 | 4.30e-01 | 82.4% | 68.0% |
| 4261822 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.64 | 51.0 | 3.67e-01 | 100.0% | 89.2% |
| 3691998 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.61 | 43.0 | 4.02e-01 | 100.0% | 60.0% |
| 3993435 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.60 | 44.0 | 2.88e-01 | 78.4% | 19.1% |
| 3405122 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.58 | 47.0 | 3.19e-01 | 100.0% | 88.1% |
| 3894682 | 386.1.1.242 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 | 0.57 | 37.0 | 3.37e-01 | 80.4% | 48.6% |
| 3232194 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.56 | 37.0 | 2.53e-01 | 90.2% | 16.3% |
| 4948218 | 243.6.1.12 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA | 0.56 | 45.0 | 4.01e-01 | 100.0% | 78.8% |
| 5069567 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.56 | 45.0 | 4.21e-01 | 100.0% | 87.1% |
| 5016305 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.56 | 45.0 | 3.87e-01 | 98.0% | 69.5% |
| 5023601 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.56 | 46.0 | 4.05e-01 | 98.0% | 78.8% |
| 3232349 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.55 | 42.0 | 3.36e-01 | 86.3% | 40.4% |
| 3606305 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.55 | 42.0 | 3.17e-01 | 86.3% | 34.1% |
| 5083058 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.55 | 44.0 | 4.02e-01 | 100.0% | 83.7% |
| 2391719 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.54 | 43.0 | 3.71e-01 | 100.0% | 52.7% |
| 4943586 | 243.6.1.12 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA | 0.53 | 43.0 | 3.85e-01 | 98.0% | 83.7% |
| 5049834 | 7576.1.1.1 ↗ | a/b three-layered sandwiches › Gingipain R extra N-terminal alpha/beta domain › Gingipain R extra N-terminal alpha/beta domain › Gingipain R extra N-terminal alpha/beta domain › Peptidase_C25 | 0.53 | 41.0 | 3.10e-01 | 98.0% | 83.7% |
| 4963287 | 375.1.1.334 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 | 0.53 | 38.0 | 3.75e-01 | 86.3% | 76.4% |
| 3490040 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.52 | 39.0 | 3.12e-01 | 84.3% | 38.5% |
| 3632159 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.52 | 42.0 | 3.02e-01 | 92.2% | 53.8% |
| 3413048 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 39.0 | 2.34e-01 | 88.2% | 29.8% |
| 3402002 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.51 | 38.0 | 3.01e-01 | 88.2% | 51.9% |
| 4029394 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.51 | 39.0 | 2.73e-01 | 90.2% | 25.1% |
| 4115268 | 4137.1.1.1 ↗ | a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 | 0.50 | 41.0 | 3.83e-01 | 100.0% | 76.8% |