←Back to structures

NC_048028.1__YP_009807771.1__HOT82_gp075__00075

Bact-Vir

Identity

Accession:: NC_048028 ↗
Kingdom:: phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ronaldovirus› Gordonia_phage_Ronaldo

TaxID: 2250397

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-111

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6s8zA01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.67	36.0	4.59e-01	70.6%	91.9%
1khiA01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.63	37.0	4.34e-01	75.2%	84.0%
3cpfA01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.62	33.0	4.06e-01	75.2%	84.6%
4n6tA00	3.10.450.10	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.58	37.0	4.23e-01	79.8%	87.3%
6u10A00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.54	45.0	3.46e-01	94.5%	90.3%
4jrnA02	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.53	43.0	3.95e-01	87.2%	88.7%
1dz1A00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.53	29.0	3.54e-01	71.6%	84.3%
5c0pA00	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.51	41.0	3.10e-01	89.0%	61.3%
3ulbA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.51	33.0	3.72e-01	82.6%	88.0%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3306779	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.68	36.0	4.52e-01	70.6%	86.2%
3950208	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.68	36.0	4.55e-01	70.6%	87.7%
3265170	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.68	36.0	4.49e-01	70.6%	86.2%
4135259	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.67	36.0	4.52e-01	71.6%	87.7%
4037383	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.67	36.0	4.48e-01	70.6%	87.7%
4863266	4.1.1.139 ↗	beta barrels › SH3 › SH3 › SH3 › IF5A-like_N	0.65	34.0	4.20e-01	75.2%	83.1%
4968081	375.1.1.299 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf	0.59	31.0	4.11e-01	70.6%	100.0%
3392130	4.1.1.223 ↗	beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st	0.58	33.0	4.10e-01	85.3%	93.8%
3408090	4.8.1.0 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like	0.56	36.0	4.26e-01	83.5%	100.0%
3942998	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.56	34.0	4.08e-01	78.9%	94.3%
2388493	4.8.1.2 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow	0.56	31.0	4.01e-01	76.1%	93.8%
3979564	4246.1.1.0 ↗	a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit	0.55	26.0	3.14e-01	78.9%	67.7%
4006488	4959.1.1.0 ↗	a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit	0.54	26.0	3.14e-01	78.9%	69.2%
3792511	206.1.1.72 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal	0.53	37.0	2.57e-01	71.6%	91.8%
3277727	4.8.1.43 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP	0.51	34.0	3.67e-01	86.2%	80.0%