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NC_048028.1__YP_009807787.1__HOT82_gp091__00091

Bact-Vir

NC_048028.1__YP_009807787.1__HOT82_gp091__00091

Identity

Accession:
NC_048028 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-111
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.87 59.0 6.26e-01 100.0% 78.1%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 62.0 6.35e-01 100.0% 87.2%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.78 59.0 4.23e-01 95.1% 30.5%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.77 62.0 6.60e-01 100.0% 98.6%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 57.0 6.33e-01 82.9% 97.0%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.73 62.0 5.16e-01 90.2% 55.6%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 57.0 6.13e-01 85.4% 97.2%
5ziyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.70 65.0 4.81e-01 98.8% 87.1%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 51.0 4.08e-01 87.8% 40.0%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 54.0 5.84e-01 82.9% 100.0%
3nb0B03 6.10.260.10 Special › Helix non-globular › F1FO ATP Synthase › 0.70 56.0 5.62e-01 91.5% 85.7%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 64.0 4.49e-01 100.0% 35.9%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.69 63.0 3.88e-01 100.0% 17.6%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 64.0 4.49e-01 100.0% 36.0%
3tu3B03 1.20.1050.100 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 45.0 3.53e-01 78.0% 32.4%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 50.0 5.11e-01 86.6% 81.8%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 54.0 5.02e-01 89.0% 68.0%
2fji101 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.68 52.0 3.89e-01 100.0% 32.5%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 51.0 5.42e-01 86.6% 91.7%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 53.0 4.92e-01 90.2% 66.3%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.68 56.0 4.63e-01 93.9% 51.0%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.67 57.0 5.16e-01 92.7% 69.4%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 3.98e-01 89.0% 41.6%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.66 53.0 5.34e-01 86.6% 100.0%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 58.0 5.50e-01 100.0% 81.0%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 48.0 3.33e-01 82.9% 23.5%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.65 55.0 5.65e-01 96.3% 95.0%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.65 58.0 4.87e-01 100.0% 66.0%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 59.0 4.88e-01 100.0% 58.3%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 49.0 4.42e-01 87.8% 58.3%
2ozbB01 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 56.0 4.72e-01 93.9% 88.5%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.64 56.0 4.41e-01 100.0% 59.1%
3pwxA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.64 59.0 4.45e-01 100.0% 72.3%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.63 52.0 4.61e-01 93.9% 62.2%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 51.0 4.18e-01 87.8% 74.0%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.63 57.0 5.41e-01 100.0% 85.4%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 56.0 3.97e-01 100.0% 47.0%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.63 46.0 4.24e-01 93.9% 59.8%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 51.0 4.70e-01 90.2% 69.7%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 56.0 5.21e-01 98.8% 83.5%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 47.0 4.83e-01 95.1% 85.9%
1io1A01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.62 54.0 4.30e-01 100.0% 88.2%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.61 45.0 4.31e-01 87.8% 68.4%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.61 54.0 4.00e-01 100.0% 39.0%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.60 47.0 4.08e-01 82.9% 54.4%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 52.0 4.48e-01 100.0% 91.0%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.59 46.0 4.59e-01 84.1% 87.1%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 4.20e-01 86.6% 64.5%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.59 44.0 4.54e-01 79.3% 94.8%
4r3aA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 39.0 3.07e-01 70.7% 31.8%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.56 46.0 3.07e-01 87.8% 84.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4914663 109.3.1.167 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ion_trans, TRPM2 0.90 51.0 3.07e-01 100.0% 10.3%
3297770 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.81 52.0 5.22e-01 96.3% 63.5%
3588281 622.4.1.34 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DctQ 0.81 49.0 4.36e-01 100.0% 45.5%
3486722 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.80 74.0 5.71e-01 100.0% 49.4%
3232414 632.7.1.25 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 0.79 51.0 5.33e-01 91.5% 72.0%
3499376 3922.1.1.205 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BAR_3 0.77 72.0 5.63e-01 100.0% 52.5%
3212246 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 63.0 4.83e-01 100.0% 40.6%
3316951 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.75 65.0 4.57e-01 100.0% 32.6%
3484528 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.75 70.0 4.52e-01 100.0% 29.0%
3589462 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 67.0 5.01e-01 100.0% 51.3%
3388013 1075.4.1.7 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › SbmA_BacA 0.73 67.0 4.32e-01 100.0% 24.1%
3415351 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.72 59.0 5.19e-01 95.1% 61.7%
3916642 192.2.1.56 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 0.72 66.0 5.30e-01 98.8% 85.3%
3715946 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 58.0 4.98e-01 90.2% 56.8%
5047150 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.70 57.0 4.16e-01 85.4% 98.5%
4940192 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 63.0 5.63e-01 98.8% 88.6%
3943772 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 64.0 4.79e-01 100.0% 46.8%
3284348 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 48.0 4.14e-01 76.8% 48.0%
4008954 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.68 45.0 4.22e-01 72.0% 56.0%
2555592 5069.1.1.3 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I 0.67 55.0 5.49e-01 86.6% 84.7%
4116779 603.1.1.174 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA 0.67 47.0 4.88e-01 91.5% 80.0%
3599587 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 52.0 4.04e-01 84.1% 40.0%
3258488 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 51.0 4.80e-01 93.9% 67.0%
3609435 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.66 57.0 5.51e-01 100.0% 83.3%
3205696 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.66 57.0 4.81e-01 93.9% 57.0%
3424218 1008.1.1.0 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.66 59.0 5.32e-01 97.6% 72.7%
56798 150.7.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.65 49.0 5.08e-01 79.3% 100.0%
4996138 5069.1.3.136 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MS_channel_1st 0.65 49.0 4.12e-01 79.3% 48.9%
4988993 5086.1.1.231 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook 0.65 59.0 4.80e-01 100.0% 68.0%
3602143 3755.3.1.305 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.65 59.0 4.18e-01 100.0% 36.7%
3257573 633.6.1.2 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.64 56.0 4.45e-01 97.6% 47.1%
4857248 5064.1.1.1 alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL 0.64 49.0 4.14e-01 80.5% 52.6%
1252012 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.64 49.0 4.66e-01 87.8% 67.7%
3949830 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 56.0 4.97e-01 100.0% 91.7%
3294780 3755.3.1.375 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF4079 0.63 54.0 4.44e-01 93.9% 73.3%
4629785 3922.1.1.269 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook 0.63 56.0 3.83e-01 100.0% 74.5%
3399338 605.1.1.24 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › ACP53EA 0.63 48.0 4.54e-01 82.9% 90.0%
3614037 633.23.1.11 alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.63 54.0 4.02e-01 100.0% 38.5%
3938199 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 53.0 4.25e-01 97.6% 45.7%
5023516 3922.1.1.269 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook 0.62 55.0 3.97e-01 100.0% 58.7%
4968655 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 55.0 4.48e-01 100.0% 91.6%
5054860 3755.3.1.305 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.61 54.0 4.18e-01 100.0% 57.3%
4524703 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.60 46.0 4.22e-01 85.4% 60.0%
3630314 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 52.0 3.99e-01 100.0% 78.0%
5014330 148.1.3.402 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook 0.60 53.0 4.81e-01 98.8% 81.8%
3939318 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.59 47.0 3.11e-01 89.0% 31.2%
3975961 5058.1.1.88 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 0.59 46.0 4.36e-01 89.0% 70.0%
3691581 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 52.0 4.46e-01 100.0% 60.7%
3204729 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 51.0 3.19e-01 100.0% 18.3%
3726953 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 51.0 4.40e-01 100.0% 60.7%
4948599 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 49.0 4.79e-01 100.0% 86.7%