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NC_048028.1__YP_009807793.1__HOT82_gp097__00097

Bact-Vir

NC_048028.1__YP_009807793.1__HOT82_gp097__00097

Identity

Accession:
NC_048028 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ronaldovirus› Gordonia_phage_Ronaldo

TaxID: 2250397

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-122
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.72 55.0 4.66e-01 81.5% 100.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.69 55.0 5.30e-01 95.4% 76.7%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 51.0 3.86e-01 81.5% 80.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 4.99e-01 90.8% 86.9%
1hibA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 43.0 3.38e-01 70.8% 98.7%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.64 49.0 5.30e-01 87.7% 100.0%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 54.0 4.45e-01 98.5% 59.7%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 46.0 4.91e-01 78.5% 100.0%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.62 46.0 3.89e-01 80.0% 89.3%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.62 50.0 4.75e-01 87.7% 93.4%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.61 43.0 4.36e-01 75.4% 87.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 4.16e-01 100.0% 70.1%
3hrpA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 48.0 3.08e-01 86.2% 89.8%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 48.0 4.31e-01 87.7% 100.0%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 50.0 4.50e-01 93.8% 100.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 49.0 4.45e-01 93.8% 74.4%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.53e-01 87.7% 95.6%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 43.0 4.43e-01 98.5% 89.8%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.47e-01 90.8% 97.1%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.57 44.0 4.08e-01 87.7% 96.6%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 49.0 4.41e-01 98.5% 76.3%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 41.0 2.73e-01 78.5% 84.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.49e-01 90.8% 90.9%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 49.0 4.34e-01 100.0% 93.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 45.0 4.45e-01 95.4% 97.2%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.55 38.0 3.68e-01 72.3% 100.0%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.14e-01 100.0% 68.0%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.36e-01 78.5% 73.9%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.37e-01 100.0% 82.9%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 36.0 3.10e-01 70.8% 93.8%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.38e-01 98.5% 97.3%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.53 40.0 3.31e-01 76.9% 82.9%
2qtlA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 44.0 3.79e-01 93.8% 100.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 36.0 3.42e-01 72.3% 90.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.47e-01 98.5% 100.0%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 42.0 3.67e-01 89.2% 79.4%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 39.0 3.04e-01 84.6% 45.8%
1md6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 40.0 3.14e-01 86.2% 98.1%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 34.0 3.67e-01 89.2% 78.9%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 42.0 2.73e-01 95.4% 83.2%
2edgA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 43.0 3.48e-01 98.5% 90.0%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4064452 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.77 66.0 5.20e-01 98.5% 46.4%
4046385 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.74 64.0 5.03e-01 98.5% 48.6%
3947337 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.73 62.0 4.74e-01 98.5% 40.6%
2444014 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.73 62.0 4.91e-01 98.5% 45.1%
3972956 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.72 60.0 4.75e-01 98.5% 43.4%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.71e-01 81.5% 94.5%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.55e-01 78.5% 96.4%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.56e-01 89.2% 93.3%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.80e-01 87.7% 100.0%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.53e-01 86.2% 96.4%
3282690 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.67 51.0 4.25e-01 98.5% 45.0%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.29e-01 89.2% 88.6%
5063537 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 50.0 5.15e-01 89.2% 91.7%
4193599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.72e-01 95.4% 73.3%
3839849 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.65 49.0 4.99e-01 92.3% 84.6%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 51.0 5.05e-01 89.2% 87.1%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 5.20e-01 81.5% 100.0%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 5.16e-01 87.7% 100.0%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 50.0 5.07e-01 87.7% 93.8%
4280256 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 45.0 5.00e-01 92.3% 98.0%
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 54.0 3.15e-01 98.5% 18.9%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 50.0 4.72e-01 89.2% 88.7%
4225207 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.63 45.0 4.61e-01 84.6% 81.7%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 49.0 4.89e-01 89.2% 82.9%
3781711 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.63 44.0 4.62e-01 81.5% 87.3%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.63 47.0 4.75e-01 92.3% 84.6%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 43.0 4.75e-01 81.5% 96.0%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 50.0 5.01e-01 89.2% 92.3%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.62 47.0 4.70e-01 92.3% 84.6%
3931904 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.62 45.0 4.78e-01 87.7% 94.5%
4930861 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 48.0 4.82e-01 86.2% 92.3%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.62 46.0 4.68e-01 92.3% 84.6%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.62 48.0 4.82e-01 90.8% 87.7%
3649175 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 48.0 3.03e-01 90.8% 15.3%
5035934 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 47.0 4.72e-01 84.6% 90.8%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.61 47.0 4.78e-01 92.3% 87.7%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.61 45.0 4.69e-01 90.8% 90.0%
3862126 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.61 44.0 4.56e-01 84.6% 85.0%
5030430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.86e-01 89.2% 90.8%
3684909 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.61 42.0 4.43e-01 78.5% 85.5%
4611708 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.61 45.0 4.64e-01 89.2% 88.3%
3964846 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.61 45.0 4.22e-01 86.2% 63.5%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.60 45.0 4.80e-01 84.6% 98.2%
3609597 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.60 43.0 4.44e-01 80.0% 83.3%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 47.0 4.78e-01 89.2% 93.8%
3930462 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.60 44.0 3.52e-01 78.5% 42.2%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 48.0 4.34e-01 90.8% 73.7%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.77e-01 92.3% 92.1%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 53.0 5.26e-01 100.0% 100.0%
4038642 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 53.0 5.20e-01 100.0% 100.0%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 45.0 4.58e-01 84.6% 89.2%
5013683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.64e-01 87.7% 91.7%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 51.0 5.03e-01 95.4% 95.7%
3941962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.27e-01 89.2% 68.9%
5019383 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.42e-01 86.2% 77.3%
4142364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.62e-01 86.2% 87.7%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.33e-01 84.6% 97.3%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 52.0 4.59e-01 100.0% 72.9%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.63e-01 87.7% 90.8%
4204303 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 52.0 4.69e-01 100.0% 77.8%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.39e-01 87.7% 100.0%
4047241 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 52.0 4.58e-01 100.0% 73.7%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 52.0 5.08e-01 100.0% 98.6%
4580145 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.58 48.0 4.37e-01 89.2% 74.1%
4184958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 51.0 4.74e-01 100.0% 81.2%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 48.0 4.86e-01 95.4% 100.0%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 51.0 4.50e-01 100.0% 73.7%
4163711 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 49.0 4.55e-01 96.9% 78.8%
3952707 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 3.94e-01 98.5% 78.5%
3914794 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 48.0 3.48e-01 98.5% 65.4%
5046975 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.57 50.0 4.69e-01 100.0% 95.0%
4316004 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 46.0 4.29e-01 92.3% 84.7%
3761440 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.29e-01 83.1% 92.7%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 48.0 4.83e-01 93.8% 100.0%
3708407 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 46.0 4.30e-01 92.3% 100.0%
3524786 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 41.0 2.96e-01 76.9% 69.7%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 48.0 4.43e-01 100.0% 76.7%
4512995 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 50.0 4.88e-01 100.0% 98.6%
4281020 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 49.0 4.34e-01 100.0% 71.6%
3326656 5.1.4.228 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Glyoxal_oxid_N 0.56 40.0 2.45e-01 76.9% 83.2%
4087314 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.55 48.0 4.54e-01 100.0% 88.7%
4134791 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.54 46.0 3.06e-01 95.4% 94.5%
3969204 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 4.46e-01 100.0% 100.0%
3938601 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 38.0 3.49e-01 80.0% 81.1%
4588686 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.53 44.0 2.96e-01 95.4% 96.0%
3227779 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.50e-01 89.2% 19.2%
3405742 11.1.1.596 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR-1-like_5th 0.52 44.0 3.36e-01 100.0% 68.2%