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YP_009808165.1

Arc-Vir

NC_048037__YP_009808165.1__HOT91-gp55__00055

Identity

Accession:
NC_048037 ↗
Protein ID:
YP_009808165.1 ↗
Kingdom:
archaea

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-54_108-172
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 31.0 2.91e-01 92.7% 45.1%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 25.0 3.27e-01 76.1% 92.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3210445 3685.1.1.1 a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA 0.58 33.0 3.43e-01 100.0% 58.6%
3614175 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 24.0 2.43e-01 74.3% 35.5%
3787176 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.54 40.0 3.82e-01 100.0% 66.2%
3235657 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.53 24.0 3.45e-01 73.4% 100.0%
3396837 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.53 29.0 3.48e-01 95.4% 81.4%
3654824 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 29.0 2.84e-01 100.0% 47.5%
2556671 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.51 24.0 3.00e-01 75.2% 73.8%
D2 medium residues 55-107
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.73 65.0 4.67e-01 100.0% 79.1%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.71 62.0 4.31e-01 100.0% 68.6%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 55.0 4.78e-01 100.0% 62.4%
6oyfA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.64 52.0 3.89e-01 100.0% 69.4%
4ae5C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 48.0 3.50e-01 100.0% 28.5%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.83e-01 100.0% 77.3%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.62 53.0 4.44e-01 100.0% 64.9%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 48.0 3.27e-01 86.8% 28.6%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.62 52.0 4.08e-01 100.0% 52.5%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 50.0 3.80e-01 96.2% 60.6%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.61 46.0 3.91e-01 88.7% 67.3%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 46.0 3.41e-01 88.7% 39.1%
1eayD00 3.30.70.400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CheY-binding domain of CheA 0.61 48.0 4.56e-01 100.0% 75.4%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.60 46.0 3.11e-01 94.3% 98.5%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.60 41.0 2.88e-01 71.7% 43.6%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 48.0 4.14e-01 100.0% 61.2%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.96e-01 86.8% 75.6%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 50.0 4.24e-01 100.0% 62.2%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.60 46.0 3.66e-01 88.7% 84.2%
2epjA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 48.0 3.42e-01 94.3% 44.3%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.59 34.0 2.65e-01 100.0% 25.8%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.58 40.0 2.94e-01 71.7% 52.8%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.56 46.0 4.36e-01 100.0% 80.0%
1sqgA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.56 44.0 4.35e-01 100.0% 84.5%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.00e-01 100.0% 57.1%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 46.0 4.34e-01 100.0% 85.1%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.56 46.0 4.34e-01 98.1% 82.4%
1c4kA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 44.0 3.23e-01 100.0% 35.6%
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 41.0 4.07e-01 86.8% 80.4%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.45e-01 81.1% 74.7%
3ajdA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.54 43.0 4.26e-01 100.0% 85.0%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 44.0 4.12e-01 100.0% 77.5%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 45.0 3.84e-01 100.0% 66.0%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.46e-01 83.0% 70.2%
3ljyA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 37.0 2.57e-01 100.0% 18.0%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.51 42.0 3.01e-01 100.0% 49.2%
5iheB01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.51 40.0 2.64e-01 100.0% 81.9%
3oduB01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 39.0 2.63e-01 94.3% 92.4%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.50e-01 90.6% 64.3%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.50 40.0 3.45e-01 100.0% 52.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057765 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.75 67.0 5.82e-01 100.0% 68.8%
4955445 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.72 63.0 5.78e-01 100.0% 78.6%
5047775 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.72 49.0 4.22e-01 71.7% 52.9%
5075866 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 60.0 5.20e-01 94.3% 96.2%
5044181 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.70 60.0 5.42e-01 100.0% 73.3%
4977215 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.69 52.0 5.11e-01 100.0% 75.0%
3969124 3261.1.1.2 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_1st 0.67 48.0 4.77e-01 83.0% 74.5%
5012054 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.67 51.0 4.70e-01 84.9% 67.1%
3223768 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.65 55.0 5.24e-01 100.0% 83.1%
3510416 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.65 45.0 3.10e-01 73.6% 23.2%
5038997 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 49.0 4.68e-01 100.0% 70.8%
5015450 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 54.0 4.75e-01 100.0% 63.7%
3204533 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 48.0 4.47e-01 94.3% 65.3%
5041711 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 49.0 4.64e-01 100.0% 74.3%
3966338 327.16.1.19 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › NRho 0.62 50.0 4.99e-01 100.0% 90.9%
4373306 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.61 51.0 4.66e-01 100.0% 76.0%
4127397 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.61 49.0 4.74e-01 98.1% 89.2%
4291953 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.60 50.0 4.20e-01 100.0% 75.0%
4201723 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.60 45.0 4.62e-01 86.8% 90.0%
1956182 304.164.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein NegoA.19184.a C-terminal domain › Hypothetical protein NegoA.19184.a C-terminal domain 0.60 50.0 4.56e-01 100.0% 69.4%
4279367 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 48.0 4.32e-01 96.2% 76.2%
4229550 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.60 49.0 4.36e-01 100.0% 71.8%
4197044 3433.1.2.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.60 44.0 4.47e-01 84.9% 98.0%
4582413 6051.5.1.1 alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N 0.59 39.0 3.97e-01 81.1% 72.0%
5073703 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 46.0 4.76e-01 96.2% 96.0%
3838053 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.59 49.0 4.70e-01 100.0% 89.2%
4536162 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.59 48.0 4.45e-01 100.0% 74.7%
3669363 11.1.1.389 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EDR2_C 0.58 45.0 3.52e-01 88.7% 96.2%
4058826 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 47.0 4.21e-01 100.0% 67.1%
3621974 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 48.0 4.37e-01 98.1% 70.7%
4050573 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 47.0 4.40e-01 100.0% 81.4%
4670438 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.57 42.0 4.14e-01 84.9% 86.4%
3289385 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.56 42.0 4.34e-01 84.9% 96.0%
4644238 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.56 46.0 4.09e-01 100.0% 68.2%
1918436 6051.5.1.1 alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N 0.56 37.0 3.65e-01 81.1% 61.0%
4058430 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 45.0 4.33e-01 100.0% 81.5%
3740503 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 45.0 4.30e-01 100.0% 89.2%
3782669 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.55 44.0 4.16e-01 100.0% 80.0%
3982462 4132.1.1.1 alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC 0.55 43.0 2.83e-01 96.2% 47.3%
2453059 6051.5.1.1 alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N 0.54 36.0 3.46e-01 84.9% 56.1%
3885988 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.54 41.0 2.90e-01 86.8% 35.1%
4055520 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.54 42.0 3.84e-01 100.0% 68.2%
3989542 2484.1.1.269 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.53 35.0 2.91e-01 90.6% 34.3%
4935632 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 40.0 4.02e-01 100.0% 92.7%
3281384 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.52 36.0 3.80e-01 71.7% 88.9%
3684568 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.52 41.0 2.85e-01 94.3% 43.3%
5016433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.52e-01 83.0% 70.7%
5079449 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 40.0 2.87e-01 88.7% 96.5%
3594305 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 35.0 2.24e-01 71.7% 30.0%
5020252 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 39.0 3.08e-01 88.7% 49.2%