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YP_009808169.1

Arc-Vir

NC_048037__YP_009808169.1__HOT91-gp59__00059

Identity

Accession:
NC_048037 ↗
Protein ID:
YP_009808169.1 ↗
Kingdom:
archaea

Quality

69.9 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Alphalipothrixvirus› Sulfolobus_filamentous_virus_1

TaxID: 2304198

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-102
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.71 51.0 4.36e-01 75.8% 70.3%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.70 52.0 3.83e-01 77.9% 82.2%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.69 53.0 3.90e-01 81.1% 79.4%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.67 49.0 4.02e-01 75.8% 42.9%
1nrfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.67 51.0 3.79e-01 82.1% 80.1%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.67 47.0 4.35e-01 73.7% 72.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.63 55.0 5.09e-01 97.9% 76.0%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.63 38.0 3.69e-01 73.7% 53.8%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 56.0 4.52e-01 100.0% 65.9%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 43.0 3.75e-01 85.3% 46.3%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.61 52.0 4.44e-01 100.0% 57.3%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 41.0 3.10e-01 71.6% 78.5%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.59 43.0 4.25e-01 75.8% 79.6%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.89e-01 77.9% 97.0%
5kbzB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 41.0 2.88e-01 73.7% 39.4%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 39.0 3.53e-01 97.9% 49.6%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 52.0 4.76e-01 97.9% 100.0%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.58 49.0 3.34e-01 91.6% 65.0%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 40.0 2.93e-01 72.6% 32.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 4.04e-01 87.4% 90.5%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.56 50.0 4.53e-01 97.9% 80.2%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 4.27e-01 95.8% 95.5%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.55 48.0 4.27e-01 95.8% 67.6%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 4.07e-01 100.0% 76.2%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.65e-01 77.9% 100.0%
1na8B00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.55 49.0 4.27e-01 100.0% 87.6%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.54e-01 74.7% 97.7%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.54 46.0 4.35e-01 98.9% 100.0%
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.53 39.0 3.70e-01 78.9% 81.9%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.49e-01 100.0% 80.6%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.04e-01 89.5% 95.0%
2if7B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.42e-01 89.5% 100.0%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 43.0 3.44e-01 94.7% 78.4%
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.52 38.0 3.03e-01 76.8% 79.7%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.64e-01 91.6% 70.1%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.23e-01 73.7% 78.7%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 45.0 3.04e-01 100.0% 53.7%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.76e-01 85.3% 34.4%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 44.0 3.17e-01 98.9% 96.2%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 44.0 2.94e-01 100.0% 70.9%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 38.0 3.37e-01 100.0% 54.9%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 42.0 3.08e-01 95.8% 43.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625974 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.75 58.0 5.99e-01 89.5% 86.7%
4572271 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.72 53.0 3.90e-01 76.8% 79.6%
3183221 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.71 51.0 3.62e-01 73.7% 36.2%
3972141 881.1.1.25 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.70 51.0 4.29e-01 75.8% 46.5%
4059480 881.1.1.37 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.70 51.0 4.12e-01 84.2% 41.7%
3250326 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.70 50.0 3.60e-01 74.7% 34.9%
150440 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.67 49.0 4.06e-01 75.8% 44.2%
4123311 5087.3.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.67 51.0 3.30e-01 80.0% 82.0%
4554156 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.66 47.0 3.41e-01 74.7% 63.8%
3973908 881.1.1.25 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.65 47.0 4.00e-01 75.8% 47.1%
184719 3514.1.1.1 ↗ a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.63 55.0 5.09e-01 97.9% 76.0%
5074714 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.63 45.0 4.41e-01 92.6% 67.6%
5079639 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 47.0 3.32e-01 78.9% 66.8%
165299 375.1.1.34 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Churchill 0.63 38.0 3.69e-01 73.7% 53.8%
5044412 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 45.0 3.33e-01 75.8% 72.7%
3829563 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.63 57.0 4.73e-01 100.0% 63.0%
3818565 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.62 45.0 3.88e-01 76.8% 50.3%
4944259 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.62 45.0 3.34e-01 75.8% 75.3%
3398781 5087.3.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.61 55.0 3.93e-01 100.0% 96.1%
4982246 3521.1.1.0 ↗ a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain 0.60 48.0 4.79e-01 94.7% 85.0%
3838102 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.59 50.0 3.23e-01 93.7% 34.6%
3235810 5087.3.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.59 52.0 3.82e-01 100.0% 95.2%
3074009 9.1.1.31 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VtrC 0.59 52.0 4.66e-01 96.8% 92.5%
5014272 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 39.0 4.48e-01 90.5% 94.3%
5069097 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.58 47.0 4.38e-01 90.5% 70.8%
3797649 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 42.0 4.00e-01 75.8% 72.7%
4030396 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 51.0 4.62e-01 100.0% 76.9%
3242101 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.57 47.0 2.89e-01 90.5% 44.7%
3531967 11.1.1.368 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Neurexophilin 0.56 51.0 4.43e-01 100.0% 97.2%
5014898 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 2.84e-01 83.2% 30.6%
4016485 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.56 44.0 4.33e-01 86.3% 99.0%
5014023 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 44.0 3.51e-01 100.0% 43.5%
4142339 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.55 39.0 3.53e-01 75.8% 56.4%
5045102 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 41.0 4.19e-01 95.8% 82.1%
3217509 243.1.1.46 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 0.55 39.0 3.39e-01 73.7% 87.3%
3217156 243.1.1.46 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 0.54 39.0 3.44e-01 74.7% 96.4%
3197622 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.53 45.0 4.40e-01 94.7% 84.8%
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.53 42.0 4.33e-01 100.0% 92.2%
7600 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.52 43.0 3.40e-01 94.7% 74.9%
3965735 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.52 38.0 3.98e-01 89.5% 89.4%
5071621 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 47.0 3.38e-01 100.0% 36.8%
3216464 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.51 36.0 3.34e-01 73.7% 97.6%
4660347 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.51 44.0 3.17e-01 98.9% 94.1%
3359496 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 45.0 3.27e-01 100.0% 42.8%