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NC_048038.1__YP_009808218.1__HOT92_gp59__00042
Bact-VirNC_048038.1__YP_009808218.1__HOT92_gp59__00042
Identity
- Accession:
- NC_048038 ↗
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Taxonomy
TaxID: 2301539
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-82
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u83A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 40.0 | 3.65e-01 | 100.0% | 42.6% |
| 4r6uA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 41.0 | 3.70e-01 | 100.0% | 45.6% |
| 1f5aA01 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.64 | 49.0 | 4.40e-01 | 98.7% | 58.9% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.61 | 43.0 | 3.55e-01 | 100.0% | 40.1% |
| 3c6kB03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 44.0 | 3.32e-01 | 100.0% | 31.0% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 43.0 | 3.12e-01 | 98.7% | 26.0% |
| 2d7vB00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.60 | 47.0 | 3.70e-01 | 84.0% | 51.0% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.60 | 43.0 | 4.00e-01 | 76.0% | 66.0% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 37.0 | 3.49e-01 | 98.7% | 51.1% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 43.0 | 3.82e-01 | 100.0% | 53.2% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 43.0 | 3.65e-01 | 80.0% | 81.3% |
| 2bj0A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.58 | 46.0 | 3.40e-01 | 100.0% | 32.0% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.57 | 44.0 | 4.22e-01 | 100.0% | 72.2% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.57 | 36.0 | 3.13e-01 | 100.0% | 37.5% |
| 1ygyA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 36.0 | 3.66e-01 | 97.3% | 64.5% |
| 2wyhA05 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 4.01e-01 | 100.0% | 58.2% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 44.0 | 3.23e-01 | 100.0% | 32.3% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 41.0 | 2.99e-01 | 98.7% | 27.9% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.55 | 43.0 | 4.53e-01 | 100.0% | 93.9% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.48e-01 | 98.7% | 57.6% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.54 | 37.0 | 3.63e-01 | 100.0% | 64.0% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.54 | 42.0 | 4.48e-01 | 100.0% | 96.9% |
| 4fo0A03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 43.0 | 3.45e-01 | 88.0% | 73.9% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.54 | 47.0 | 3.66e-01 | 100.0% | 90.8% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.26e-01 | 96.0% | 54.5% |
| 4gafB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.25e-01 | 100.0% | 49.1% |
| 2osoA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.53 | 41.0 | 3.28e-01 | 100.0% | 40.8% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 38.0 | 2.80e-01 | 98.7% | 27.4% |
| 6pf8A01 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 40.0 | 3.17e-01 | 86.7% | 83.0% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 38.0 | 2.92e-01 | 100.0% | 32.6% |
| 3mxqC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 45.0 | 3.86e-01 | 98.7% | 85.6% |
| 3e4pA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 3.89e-01 | 96.0% | 90.8% |
| 3ttqA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 38.0 | 2.65e-01 | 78.7% | 40.3% |
| 2ychA02 | 3.30.1490.300 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 37.0 | 3.90e-01 | 98.7% | 98.3% |
| 2i6gB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 39.0 | 2.98e-01 | 100.0% | 32.7% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.50 | 44.0 | 4.05e-01 | 100.0% | 95.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083051 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.75 | 68.0 | 4.47e-01 | 98.7% | 80.3% |
| 3191004 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.65 | 55.0 | 3.08e-01 | 93.3% | 90.9% |
| 5018729 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.64 | 57.0 | 5.02e-01 | 100.0% | 91.8% |
| 3700802 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.63 | 54.0 | 4.45e-01 | 98.7% | 52.4% |
| 3929967 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.62 | 48.0 | 4.05e-01 | 85.3% | 100.0% |
| 3269973 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.61 | 46.0 | 4.26e-01 | 97.3% | 64.2% |
| 4979129 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.61 | 45.0 | 3.58e-01 | 78.7% | 50.3% |
| 4963974 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.61 | 51.0 | 3.44e-01 | 98.7% | 40.9% |
| 3391269 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.60 | 47.0 | 4.16e-01 | 100.0% | 57.4% |
| 4028720 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.60 | 46.0 | 3.95e-01 | 100.0% | 50.0% |
| 3707944 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 47.0 | 4.03e-01 | 100.0% | 52.8% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.59 | 42.0 | 3.84e-01 | 74.7% | 83.8% |
| 3605908 | 304.31.1.3 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons | 0.59 | 47.0 | 4.08e-01 | 100.0% | 55.8% |
| 3603753 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.58 | 44.0 | 4.20e-01 | 80.0% | 98.9% |
| 1725 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.58 | 41.0 | 3.67e-01 | 100.0% | 52.3% |
| 3969252 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 43.0 | 3.59e-01 | 78.7% | 54.1% |
| 3480012 | 304.113.1.3 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › JAG1 | 0.58 | 48.0 | 4.31e-01 | 100.0% | 64.5% |
| 4228205 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 43.0 | 3.50e-01 | 78.7% | 52.1% |
| 5074066 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 42.0 | 3.48e-01 | 78.7% | 49.3% |
| 4665923 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.57 | 45.0 | 4.21e-01 | 82.7% | 98.9% |
| 4938355 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 42.0 | 3.42e-01 | 78.7% | 48.3% |
| 4058190 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.56 | 47.0 | 4.08e-01 | 98.7% | 100.0% |
| 3603836 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.56 | 46.0 | 3.84e-01 | 93.3% | 57.1% |
| 4246300 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.56 | 45.0 | 3.24e-01 | 100.0% | 30.4% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.56 | 46.0 | 3.37e-01 | 93.3% | 92.4% |
| 4085595 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.56 | 47.0 | 4.03e-01 | 100.0% | 100.0% |
| 3626410 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 46.0 | 4.11e-01 | 100.0% | 63.6% |
| 169085 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.55 | 44.0 | 3.23e-01 | 100.0% | 32.5% |
| 5046705 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.55 | 40.0 | 3.59e-01 | 100.0% | 54.3% |
| 3893006 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 38.0 | 3.46e-01 | 98.7% | 51.4% |
| 5068735 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.55 | 39.0 | 2.86e-01 | 93.3% | 26.6% |
| 4016024 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.54 | 39.0 | 2.86e-01 | 90.7% | 27.1% |
| 3339079 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 41.0 | 3.34e-01 | 97.3% | 40.6% |
| 3932435 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 45.0 | 2.94e-01 | 92.0% | 82.4% |
| 5068347 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.54 | 39.0 | 3.05e-01 | 100.0% | 33.1% |
| 4030215 | 2003.1.5.97 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_32 | 0.54 | 47.0 | 3.37e-01 | 98.7% | 45.4% |
| 4856794 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.54 | 41.0 | 4.14e-01 | 85.3% | 85.7% |
| 4344201 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.54 | 47.0 | 4.45e-01 | 98.7% | 100.0% |
| 3592234 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 40.0 | 3.61e-01 | 81.3% | 62.7% |
| 3915011 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.53 | 38.0 | 3.09e-01 | 97.3% | 36.3% |
| 5050905 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.53 | 46.0 | 3.44e-01 | 97.3% | 44.7% |
| 4963275 | 223.1.1.191 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7285 | 0.53 | 32.0 | 3.06e-01 | 100.0% | 51.1% |
| 5074033 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.52 | 41.0 | 3.00e-01 | 84.0% | 42.2% |
| 3226473 | 872.1.1.9 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF29479 | 0.52 | 44.0 | 4.12e-01 | 97.3% | 75.8% |
| 3621732 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 43.0 | 3.95e-01 | 94.7% | 76.2% |
| 4880633 | 4169.1.1.1 ↗ | a+b three layers › Coronavirus spike protein receptor-binding domain › Coronavirus spike protein receptor-binding domain › Beta-coronavirus spike protein receptor-binding domain › bCoV_S1_RBD | 0.51 | 45.0 | 3.34e-01 | 98.7% | 76.4% |
| 4940969 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 38.0 | 3.66e-01 | 80.0% | 88.2% |
| 3967521 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.50 | 41.0 | 3.44e-01 | 97.3% | 61.3% |
| 4629102 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.50 | 43.0 | 2.70e-01 | 98.7% | 50.9% |