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NC_048045.1__YP_009809028.1__HOT99_gp219__00194

Bact-Vir

NC_048045.1__YP_009809028.1__HOT99_gp219__00194

Identity

Accession:
NC_048045 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Poindextervirus› Caulobacter_phage_CcrBL10

TaxID: 2283269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.76 51.0 4.01e-01 98.2% 35.2%
3tzeA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.73 66.0 5.23e-01 100.0% 60.2%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.73 58.0 4.19e-01 89.1% 100.0%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.70 58.0 5.61e-01 98.2% 84.1%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 3.85e-01 81.8% 32.6%
1bi0A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.69 52.0 5.00e-01 87.3% 71.2%
3a04A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.68 59.0 4.67e-01 100.0% 62.9%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.68 52.0 3.36e-01 89.1% 19.8%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.11e-01 81.8% 44.1%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.67 43.0 4.37e-01 98.2% 66.1%
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 4.58e-01 96.4% 58.0%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.64 50.0 4.26e-01 90.9% 59.8%
7cyuA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.62 49.0 4.89e-01 89.1% 98.2%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 46.0 4.69e-01 81.8% 90.7%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.61 46.0 3.84e-01 94.5% 45.9%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.61 48.0 4.23e-01 90.9% 90.7%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.60 47.0 4.33e-01 87.3% 65.8%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 50.0 4.48e-01 98.2% 84.2%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.55 42.0 4.15e-01 89.1% 93.4%
1bwoA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.55 41.0 3.53e-01 81.8% 61.1%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.54 47.0 4.21e-01 98.2% 78.2%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.54 48.0 3.53e-01 100.0% 48.3%
4z5qA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 47.0 2.82e-01 98.2% 34.2%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716440 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.82 52.0 3.73e-01 83.6% 25.7%
3989244 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.74 54.0 4.81e-01 81.8% 55.0%
4985324 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.73 63.0 4.48e-01 94.5% 49.7%
4931685 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.71 61.0 4.48e-01 94.5% 55.0%
3597181 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.71 59.0 5.39e-01 96.4% 76.0%
3291136 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.71 51.0 3.82e-01 81.8% 29.3%
1206851 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.70 57.0 5.15e-01 98.2% 65.4%
5030545 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.68 57.0 4.23e-01 92.7% 55.0%
3721415 608.1.1.0 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.68 55.0 3.79e-01 89.1% 26.7%
4963579 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.68 58.0 4.31e-01 94.5% 57.8%
None — 0.66 48.0 3.69e-01 81.8% 31.7%
3953573 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.66 48.0 3.69e-01 81.8% 31.7%
4931071 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.66 47.0 3.62e-01 85.5% 30.3%
3204262 5051.1.1.15 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › K_trans 0.65 54.0 3.37e-01 94.5% 51.5%
3885705 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.65 49.0 4.44e-01 89.1% 71.8%
4102250 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.65 50.0 4.51e-01 89.1% 75.0%
3572021 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.64 52.0 5.01e-01 96.4% 87.7%
3802347 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 49.0 3.02e-01 83.6% 74.3%
3705890 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 49.0 4.24e-01 89.1% 64.2%
4021322 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.63 50.0 4.22e-01 89.1% 61.0%
3506838 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 49.0 4.20e-01 89.1% 63.2%
3470186 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 48.0 4.25e-01 89.1% 66.7%
3878202 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 48.0 4.31e-01 89.1% 71.8%
4591229 190.1.1.8 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.63 51.0 4.42e-01 98.2% 69.5%
3171915 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 47.0 4.26e-01 89.1% 70.6%
3176953 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 48.0 4.52e-01 89.1% 85.7%
3486506 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.62 47.0 4.39e-01 89.1% 80.0%
3491886 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 47.0 4.39e-01 89.1% 81.3%
3379763 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.61 46.0 4.25e-01 89.1% 77.5%
3484315 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.61 46.0 4.01e-01 89.1% 63.2%
2665668 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.61 45.0 4.40e-01 85.5% 95.2%
10305 7516.1.1.25 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB 0.60 45.0 2.71e-01 94.5% 10.0%
3313375 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.60 46.0 3.57e-01 81.8% 53.9%
3398172 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 44.0 3.70e-01 83.6% 98.1%
5040865 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.59 54.0 4.06e-01 100.0% 93.0%
3597591 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.59 52.0 4.83e-01 98.2% 98.6%
3431353 1128.1.1.10 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C 0.58 47.0 4.38e-01 90.9% 80.0%
3392623 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.57 45.0 4.06e-01 89.1% 77.5%
None — 0.54 40.0 3.55e-01 89.1% 61.9%
3498339 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 47.0 4.03e-01 96.4% 75.3%
3506153 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 46.0 4.01e-01 96.4% 71.1%
3240782 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.51 43.0 3.17e-01 94.5% 39.3%
D2 high residues 67-124
PDB