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NC_048046.1__YP_009809185.1__HOU00_gp016__00016
Bact-VirNC_048046.1__YP_009809185.1__HOU00_gp016__00016
Identity
- Accession:
- NC_048046 ↗
- Kingdom:
- phage
Quality
54.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Colossusvirus›
Caulobacter_phage_CcrPW
TaxID: 2283271
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-70
Domain cluster:
rep: NC_021798.1__YP_008241632.1__Phi17-2_gp137__00137__D3-51
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.65 | 46.0 | 4.69e-01 | 98.5% | 75.8% |
| 2dn6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 40.0 | 3.38e-01 | 97.0% | 43.5% |
| 7kx7A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 49.0 | 3.43e-01 | 100.0% | 32.6% |
| 1q33A02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 39.0 | 3.03e-01 | 77.3% | 87.7% |
| 5nfiB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.62e-01 | 90.9% | 83.5% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 45.0 | 3.97e-01 | 93.9% | 80.2% |
| 4eo3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 45.0 | 3.63e-01 | 93.9% | 82.6% |
| 6i0iA00 | 3.30.350.10 | Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like | 0.54 | 38.0 | 3.29e-01 | 75.8% | 94.4% |
| 1dynA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 43.0 | 3.70e-01 | 100.0% | 53.1% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 43.0 | 3.59e-01 | 92.4% | 76.2% |
| 1a6aB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.53 | 39.0 | 3.57e-01 | 92.4% | 59.6% |
| 2fp8B00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 41.0 | 2.77e-01 | 90.9% | 25.1% |
| 4bgjA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 39.0 | 3.35e-01 | 89.4% | 89.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4015718 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.60 | 45.0 | 4.76e-01 | 100.0% | 90.0% |
| 3958247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 50.0 | 3.47e-01 | 100.0% | 28.2% |
| 3958652 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 50.0 | 3.67e-01 | 100.0% | 35.7% |
| None | — | 0.57 | 50.0 | 3.44e-01 | 100.0% | 28.1% | |
| 3536979 | 5.1.3.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL | 0.56 | 46.0 | 3.11e-01 | 95.5% | 34.9% |
| 3986085 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.56 | 50.0 | 4.44e-01 | 100.0% | 70.5% |
| 4130419 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 47.0 | 4.19e-01 | 93.9% | 80.0% |
| 3253077 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 49.0 | 3.89e-01 | 100.0% | 64.4% |
| 3396611 | 391.1.1.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › EGF1_RECK | 0.54 | 34.0 | 3.36e-01 | 71.2% | 56.0% |
| 3705090 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 42.0 | 3.74e-01 | 100.0% | 57.0% |
| 4965838 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.53 | 45.0 | 3.44e-01 | 95.5% | 77.8% |
| 5004589 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.53 | 43.0 | 3.67e-01 | 90.9% | 90.9% |
| 3882965 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.53 | 43.0 | 2.64e-01 | 93.9% | 19.4% |
| 4000212 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 2.71e-01 | 89.4% | 18.0% |
| 3518515 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.52 | 39.0 | 2.36e-01 | 84.8% | 10.0% |
| 3315597 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.51 | 36.0 | 3.39e-01 | 92.4% | 60.8% |
| 3892893 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.51 | 45.0 | 3.35e-01 | 100.0% | 41.1% |
| 5029179 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.51 | 36.0 | 3.13e-01 | 77.3% | 78.2% |
| 3456245 | 330.1.1.7 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsRBD2 | 0.51 | 42.0 | 3.40e-01 | 93.9% | 57.0% |
D2
medium
residues 106-196