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NC_048046.1__YP_009809198.1__HOU00_gp029__00029

Bact-Vir

NC_048046.1__YP_009809198.1__HOU00_gp029__00029

Identity

Accession:
NC_048046 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-56
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.80 49.0 3.66e-01 79.2% 26.3%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.76 50.0 4.62e-01 79.2% 53.2%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 60.0 4.70e-01 93.8% 46.8%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.72 54.0 5.13e-01 81.2% 86.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 48.0 4.31e-01 72.9% 60.6%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.68 52.0 4.50e-01 83.3% 78.7%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.67 48.0 4.36e-01 79.2% 56.1%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 52.0 3.79e-01 93.8% 29.9%
2r1fA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 47.0 5.19e-01 75.0% 97.4%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 52.0 3.55e-01 89.6% 82.4%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.66 49.0 3.00e-01 81.2% 23.5%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.66 47.0 3.75e-01 77.1% 87.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 47.0 3.95e-01 79.2% 47.7%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.65 52.0 3.78e-01 87.5% 32.8%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.65 46.0 4.03e-01 87.5% 49.3%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 44.0 4.69e-01 72.9% 89.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 3.79e-01 77.1% 49.4%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 43.0 3.86e-01 70.8% 62.9%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.64 51.0 3.49e-01 100.0% 25.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.87e-01 91.7% 44.0%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.62 45.0 4.34e-01 77.1% 87.3%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.62 44.0 3.89e-01 77.1% 53.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.31e-01 79.2% 72.0%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.93e-01 89.6% 45.8%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 3.52e-01 93.8% 39.9%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 45.0 3.62e-01 81.2% 39.4%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.72e-01 85.4% 45.6%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 47.0 3.31e-01 87.5% 39.3%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.50e-01 77.1% 42.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.45e-01 87.5% 33.3%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.60 47.0 3.97e-01 93.8% 85.9%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 2.95e-01 93.8% 95.1%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 48.0 3.04e-01 91.7% 35.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.69e-01 89.6% 48.1%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.59 42.0 3.66e-01 77.1% 84.4%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.48e-01 81.2% 43.9%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 44.0 3.59e-01 81.2% 44.0%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.59 50.0 3.51e-01 100.0% 47.2%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 48.0 3.07e-01 93.8% 24.1%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.58 49.0 3.33e-01 95.8% 29.9%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.58 51.0 3.44e-01 100.0% 49.2%
4zyaB00 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.58 44.0 3.80e-01 83.3% 97.4%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 2.98e-01 87.5% 51.0%
1nt4A02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.56 48.0 3.41e-01 95.8% 70.1%
2v3uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 48.0 3.38e-01 95.8% 34.7%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 44.0 4.23e-01 91.7% 78.9%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 45.0 2.86e-01 100.0% 25.2%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 43.0 3.69e-01 89.6% 75.6%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.84e-01 91.7% 95.9%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.54 45.0 2.87e-01 89.6% 44.1%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.17e-01 89.6% 32.1%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.53 46.0 3.17e-01 100.0% 61.4%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 44.0 3.31e-01 100.0% 73.8%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.52 41.0 3.16e-01 93.8% 73.3%
3apqA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.41e-01 100.0% 78.4%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940177 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 56.0 4.89e-01 70.8% 50.0%
3177024 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.79 68.0 5.12e-01 93.8% 40.9%
4004145 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.78 56.0 3.62e-01 77.1% 17.7%
5060418 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 60.0 4.41e-01 89.6% 40.0%
2507513 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.72 50.0 3.27e-01 72.9% 21.2%
3786120 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 49.0 4.85e-01 70.8% 76.0%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.71 62.0 4.92e-01 100.0% 76.0%
3272708 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.71 49.0 4.14e-01 72.9% 46.3%
3297410 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 47.0 4.16e-01 70.8% 49.3%
3407758 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 52.0 3.95e-01 81.2% 37.4%
3508939 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.70 58.0 4.28e-01 95.8% 38.5%
3427458 109.4.1.1659 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nodulin_N 0.70 49.0 3.40e-01 93.8% 24.1%
3889522 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 54.0 4.19e-01 93.8% 47.5%
1516102 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.69 54.0 3.25e-01 85.4% 22.3%
3940847 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.68 58.0 4.58e-01 100.0% 50.0%
3403184 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.68 46.0 3.66e-01 70.8% 82.0%
3752179 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.68 51.0 3.87e-01 87.5% 36.9%
4957280 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 47.0 2.89e-01 77.1% 12.2%
4950628 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.67 51.0 3.16e-01 83.3% 94.6%
3924808 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.67 45.0 3.85e-01 70.8% 85.0%
3633728 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 51.0 3.93e-01 85.4% 40.0%
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 4.18e-01 77.1% 52.9%
3228787 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.66 46.0 2.79e-01 72.9% 22.7%
4119657 3740.1.1.1 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.66 50.0 3.12e-01 83.3% 98.1%
4971724 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.63 54.0 3.28e-01 100.0% 56.5%
3515993 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.63 50.0 3.85e-01 91.7% 36.7%
5066751 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.63 49.0 2.95e-01 85.4% 77.4%
3276072 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.63 48.0 3.86e-01 91.7% 40.0%
4683204 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.63 55.0 4.29e-01 100.0% 92.4%
4956223 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 53.0 3.18e-01 91.7% 61.0%
3497972 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.62 50.0 4.34e-01 100.0% 63.5%
3737536 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 50.0 3.13e-01 91.7% 64.5%
5076406 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.86e-01 81.2% 63.5%
4009839 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 46.0 3.83e-01 85.4% 67.4%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.61 43.0 3.03e-01 75.0% 64.9%
3414272 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 46.0 3.82e-01 85.4% 44.2%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.61 49.0 3.82e-01 91.7% 40.0%
5038704 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.61 44.0 3.03e-01 79.2% 22.8%
5079107 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 50.0 3.60e-01 93.8% 33.1%
4959884 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.60 47.0 4.52e-01 85.4% 80.0%
5075957 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.60 42.0 2.72e-01 79.2% 14.8%
4446833 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.59 43.0 3.09e-01 81.2% 49.0%
3399270 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 45.0 3.51e-01 91.7% 44.0%
4792845 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 49.0 3.24e-01 93.8% 27.9%
4980177 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.58 48.0 3.58e-01 91.7% 65.8%
5075725 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 47.0 3.29e-01 89.6% 31.7%
3301563 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 41.0 3.22e-01 75.0% 70.7%
151365 2002.1.1.195 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPL 0.56 46.0 2.81e-01 93.8% 69.4%
4307219 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.55 38.0 3.72e-01 79.2% 65.5%
4998989 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.55 43.0 2.71e-01 87.5% 90.9%
4294910 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.54 39.0 3.81e-01 79.2% 67.3%
4025059 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 39.0 2.81e-01 85.4% 90.0%
3722870 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.52 39.0 2.81e-01 85.4% 37.5%
3906078 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.39e-01 95.8% 46.0%
4985007 7581.1.1.6 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.52 44.0 3.08e-01 91.7% 32.2%
3373766 7.1.1.7 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.51 37.0 2.75e-01 83.3% 51.3%
3422531 7.1.1.7 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.50 39.0 3.41e-01 87.5% 84.0%
3311132 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.50 35.0 3.11e-01 81.2% 78.8%