←Back to structures

NC_048046.1__YP_009809224.1__HOU00_gp055__00055

Bact-Vir

NC_048046.1__YP_009809224.1__HOU00_gp055__00055

Identity

Accession:
NC_048046 ↗
Kingdom:
phage

Quality

66.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrPW

TaxID: 2283271

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-104
PDB
D2 high residues 117-171
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.71 51.0 4.72e-01 92.7% 59.7%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.67 59.0 4.45e-01 100.0% 39.9%
4nx8B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.66 58.0 3.75e-01 100.0% 31.7%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.80e-01 92.7% 87.0%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 39.0 3.53e-01 72.7% 45.9%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.20e-01 94.5% 50.0%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.61 50.0 4.66e-01 100.0% 96.0%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.90e-01 94.5% 96.2%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.40e-01 81.8% 97.9%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.08e-01 96.4% 68.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.56 45.0 3.97e-01 100.0% 90.4%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 46.0 4.33e-01 100.0% 83.1%
2fiwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.33e-01 98.2% 45.0%
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 35.0 3.14e-01 70.9% 82.6%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.52 39.0 3.99e-01 87.3% 98.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174373 101.1.2.780 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31199 0.66 53.0 4.91e-01 94.5% 72.0%
4091013 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.66 57.0 4.00e-01 100.0% 30.6%
4050022 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.64 50.0 5.01e-01 92.7% 96.4%
5034762 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.63 53.0 4.07e-01 100.0% 40.0%
3937548 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.62 46.0 3.42e-01 81.8% 35.3%
3462913 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.62 50.0 4.89e-01 100.0% 90.8%
3449917 3546.1.1.1 ↗ alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N 0.61 49.0 4.83e-01 96.4% 86.7%
3474421 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.61 50.0 4.73e-01 100.0% 82.9%
3735853 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.60 48.0 4.78e-01 96.4% 95.0%
3886349 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.60 51.0 3.73e-01 100.0% 37.0%
3397412 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.59 41.0 3.70e-01 70.9% 93.3%
3840404 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.59 48.0 4.72e-01 100.0% 95.0%
3764771 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.59 45.0 4.59e-01 94.5% 100.0%
3596754 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.59 47.0 4.60e-01 100.0% 93.8%
3903431 101.35.1.29 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DEK_C 0.58 45.0 4.48e-01 94.5% 90.0%
3882320 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.58 45.0 4.46e-01 94.5% 90.0%
3993576 610.3.1.3 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.58 46.0 3.50e-01 100.0% 35.8%
3214860 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.58 44.0 4.43e-01 87.3% 90.9%
3228128 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.57 44.0 4.45e-01 92.7% 96.4%
5008181 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.56 45.0 3.39e-01 92.7% 34.7%
3724068 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.24e-01 94.5% 98.2%
3496552 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.52 37.0 3.25e-01 76.4% 56.7%
3306186 10.12.1.10 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC,JmjN 0.52 42.0 2.65e-01 94.5% 82.4%
3171915 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.51 38.0 3.34e-01 81.8% 81.2%