Back to structures

NC_048046.1__YP_009809341.1__HOU00_gp414__00172

Bact-Vir

NC_048046.1__YP_009809341.1__HOU00_gp414__00172

Identity

Accession:
NC_048046 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-78
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.68 54.0 5.62e-01 100.0% 98.5%
4c26A00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.66 48.0 4.99e-01 83.6% 86.4%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.65 54.0 3.69e-01 89.0% 88.5%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.65 57.0 4.06e-01 100.0% 87.2%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 52.0 3.62e-01 89.0% 81.7%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.64 51.0 4.83e-01 87.7% 83.0%
2e2oA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 48.0 3.73e-01 82.2% 97.6%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.63 44.0 3.55e-01 72.6% 90.3%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 47.0 3.91e-01 80.8% 50.0%
3ttcA03 3.30.420.360 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 47.0 4.02e-01 80.8% 62.0%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 40.0 3.80e-01 79.5% 53.3%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 46.0 3.83e-01 80.8% 49.6%
1sqiA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 45.0 3.50e-01 79.5% 41.3%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 41.0 3.55e-01 71.2% 43.7%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 44.0 3.81e-01 79.5% 66.4%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 42.0 3.60e-01 87.7% 43.9%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 44.0 3.55e-01 79.5% 42.7%
1rybA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.59 47.0 3.59e-01 89.0% 83.9%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 48.0 3.41e-01 89.0% 85.4%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 45.0 3.60e-01 84.9% 58.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 52.0 4.90e-01 100.0% 88.8%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 45.0 3.69e-01 86.3% 42.9%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 47.0 3.27e-01 89.0% 88.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 50.0 4.44e-01 97.3% 86.7%
4uuwA03 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.58 46.0 3.72e-01 87.7% 85.7%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 45.0 3.89e-01 87.7% 95.0%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.49e-01 91.8% 89.2%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.57 44.0 3.77e-01 83.6% 68.9%
3wfoA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 40.0 3.16e-01 74.0% 45.9%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.57 40.0 3.45e-01 74.0% 87.2%
3agkA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.57 44.0 3.73e-01 83.6% 66.9%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 43.0 3.09e-01 84.9% 83.9%
4r2xD00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 44.0 3.14e-01 87.7% 90.8%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 3.52e-01 75.3% 77.7%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.56 48.0 3.81e-01 94.5% 97.9%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 42.0 3.60e-01 83.6% 66.1%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 43.0 3.10e-01 87.7% 96.6%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.55 43.0 3.68e-01 87.7% 94.5%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 45.0 3.67e-01 94.5% 61.2%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.54 40.0 3.60e-01 84.9% 96.6%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 42.0 4.20e-01 89.0% 93.6%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 43.0 3.34e-01 98.6% 83.9%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 43.0 3.31e-01 95.9% 74.2%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 45.0 4.11e-01 100.0% 82.7%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 45.0 3.45e-01 97.3% 94.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 41.0 3.53e-01 84.9% 86.0%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 38.0 3.83e-01 80.8% 76.3%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 44.0 3.42e-01 100.0% 65.2%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.51 40.0 3.53e-01 87.7% 82.3%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.29e-01 79.5% 86.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 40.0 3.48e-01 89.0% 87.3%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.50 40.0 3.76e-01 89.0% 90.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939583 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.71 54.0 4.04e-01 87.7% 33.3%
4950404 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.70 56.0 5.57e-01 100.0% 85.3%
5049349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 44.0 3.44e-01 74.0% 30.3%
5060093 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.70 58.0 5.83e-01 100.0% 93.2%
5065528 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.69 56.0 5.73e-01 97.3% 95.7%
5053281 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 48.0 4.00e-01 72.6% 44.8%
4966352 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.68 52.0 5.20e-01 91.8% 82.7%
2410067 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.67 48.0 5.15e-01 91.8% 93.4%
4861971 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.67 44.0 5.06e-01 79.5% 100.0%
4966955 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.66 54.0 5.48e-01 100.0% 95.7%
5048715 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 44.0 3.52e-01 71.2% 35.2%
5072591 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 44.0 3.75e-01 71.2% 43.5%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 42.0 3.67e-01 71.2% 42.7%
4011254 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 53.0 3.46e-01 89.0% 59.7%
4979423 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 44.0 3.59e-01 71.2% 37.8%
4961065 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.63 43.0 4.67e-01 72.6% 85.0%
3514373 2484.1.1.80 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C 0.63 47.0 3.94e-01 80.8% 57.7%
3620870 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 42.0 3.80e-01 71.2% 50.0%
4108829 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.61 48.0 4.07e-01 84.9% 62.5%
4535267 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.61 49.0 3.68e-01 89.0% 82.1%
4208967 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.60 49.0 3.62e-01 89.0% 80.5%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 41.0 3.36e-01 71.2% 37.8%
3248413 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.60 42.0 3.48e-01 82.2% 40.0%
5042471 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.59 46.0 3.14e-01 83.6% 94.0%
3728783 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.59 45.0 3.65e-01 82.2% 69.3%
3402748 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.59 46.0 3.57e-01 87.7% 86.3%
4944328 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 47.0 3.93e-01 89.0% 91.5%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.59 45.0 3.83e-01 87.7% 81.2%
3787893 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.58 43.0 2.85e-01 79.5% 31.4%
4102441 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.58 45.0 3.66e-01 87.7% 83.9%
5079402 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 40.0 3.31e-01 71.2% 39.2%
3648910 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.58 40.0 3.80e-01 75.3% 58.9%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.58 48.0 4.76e-01 97.3% 89.3%
4329721 2484.1.1.80 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C 0.58 44.0 3.85e-01 83.6% 67.8%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 49.0 4.65e-01 100.0% 82.2%
5076734 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.57 45.0 3.48e-01 87.7% 78.3%
3479661 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 45.0 3.95e-01 86.3% 71.8%
3250283 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.57 39.0 3.34e-01 82.2% 40.8%
3280079 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 47.0 3.87e-01 90.4% 100.0%
5077814 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.57 44.0 3.15e-01 87.7% 92.1%
4455869 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.56 44.0 3.31e-01 87.7% 79.5%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.71e-01 82.2% 70.4%
5026543 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 41.0 3.29e-01 80.8% 54.7%
3980114 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.55 50.0 3.89e-01 100.0% 60.7%
4590724 3291.1.1.163 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Pescadillo_N 0.54 48.0 3.88e-01 100.0% 75.9%
4936812 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.54 41.0 3.52e-01 83.6% 80.8%
4073818 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.54 44.0 3.30e-01 95.9% 85.7%
3231897 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 45.0 2.91e-01 93.2% 61.4%
4947055 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.33e-01 82.2% 93.6%
3814095 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.53 44.0 3.31e-01 95.9% 90.2%
3461881 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.53 43.0 3.61e-01 87.7% 78.4%
4976967 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.42e-01 89.0% 71.3%
3209694 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 45.0 4.14e-01 100.0% 78.0%
3707684 243.11.1.0 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.53 42.0 4.41e-01 84.9% 98.5%
5063657 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 43.0 3.63e-01 87.7% 83.2%
5045968 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 43.0 2.72e-01 98.6% 48.0%
3690077 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 43.0 2.98e-01 94.5% 80.8%
4430771 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.16e-01 83.6% 65.5%
4154256 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.51 40.0 3.16e-01 94.5% 92.6%