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NC_048046.1__YP_009809386.1__HOU00_gp369__00217

Bact-Vir

NC_048046.1__YP_009809386.1__HOU00_gp369__00217

Identity

Accession:
NC_048046 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrPW

TaxID: 2283271

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-91
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 51.0 4.28e-01 100.0% 95.1%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 50.0 4.14e-01 100.0% 55.6%
4aq1A05 2.60.40.3460 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 3.44e-01 70.7% 91.8%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 32.0 3.25e-01 98.7% 55.6%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 38.0 4.06e-01 100.0% 85.7%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 48.0 4.02e-01 100.0% 55.5%
1h7sA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 40.0 3.01e-01 77.3% 78.8%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 35.0 4.15e-01 85.3% 98.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.55 46.0 3.73e-01 94.7% 52.4%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 27.0 2.89e-01 100.0% 50.0%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.54 39.0 3.42e-01 78.7% 96.6%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.53 39.0 3.49e-01 100.0% 53.1%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 35.0 3.67e-01 78.7% 77.6%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 33.0 3.94e-01 85.3% 98.0%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 35.0 2.28e-01 70.7% 58.6%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 36.0 4.13e-01 85.3% 98.2%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.36e-01 89.3% 96.6%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 28.0 3.19e-01 77.3% 72.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934792 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.62 37.0 3.66e-01 100.0% 56.2%
4973990 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 53.0 3.51e-01 100.0% 38.1%
4031988 3769.1.1.0 ↗ 0.57 30.0 3.66e-01 98.7% 82.2%
3914739 223.1.1.78 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC 0.57 45.0 3.36e-01 89.3% 68.3%
3755983 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 41.0 3.83e-01 78.7% 68.4%
3960268 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 49.0 3.89e-01 100.0% 65.8%
3604410 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.55 47.0 3.61e-01 97.3% 50.6%
3681726 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 43.0 2.86e-01 90.7% 100.0%
4137634 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.29e-01 98.7% 52.6%
4301885 377.4.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 0.53 29.0 2.63e-01 90.7% 37.4%
3743614 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.53 33.0 3.61e-01 70.7% 78.3%
3549359 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.52 37.0 2.73e-01 77.3% 68.9%
3279119 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.52 42.0 3.58e-01 100.0% 51.9%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 3.13e-01 98.7% 46.1%
3413365 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.51 43.0 3.41e-01 94.7% 47.5%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.51 33.0 3.06e-01 93.3% 49.0%
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.51 34.0 3.71e-01 92.0% 86.7%
4030552 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.50 39.0 3.82e-01 86.7% 100.0%
3922240 3755.3.1.321 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WHAMM-JMY_N 0.50 41.0 3.73e-01 96.0% 90.9%
D2 high residues 98-162
PDB
Domain cluster: rep: OL581612.1__UGL61107.1__X__00005__D3-74
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3mB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.64 47.0 3.77e-01 98.5% 38.9%
1o63A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 40.0 3.24e-01 95.4% 34.7%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 47.0 2.98e-01 84.6% 15.1%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 53.0 4.34e-01 93.8% 54.5%
6klsA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 44.0 3.98e-01 81.5% 81.9%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 4.68e-01 86.2% 90.3%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 3.45e-01 80.0% 56.2%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 47.0 4.02e-01 92.3% 79.1%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 49.0 3.93e-01 96.9% 78.0%
1vu2300 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.02e-01 100.0% 68.5%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.70e-01 87.7% 40.0%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.66e-01 80.0% 63.7%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 3.11e-01 72.3% 73.1%
4mkmA01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.68e-01 98.5% 92.5%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.41e-01 86.2% 45.3%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 44.0 3.75e-01 96.9% 89.2%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.64e-01 92.3% 58.9%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 41.0 4.22e-01 83.1% 87.1%
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.53 41.0 4.01e-01 89.2% 78.9%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.10e-01 96.9% 94.4%
5jipA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.13e-01 100.0% 96.7%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 2.97e-01 100.0% 78.3%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.86e-01 100.0% 91.8%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 2.88e-01 100.0% 81.6%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 40.0 3.19e-01 84.6% 46.7%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 4.18e-01 96.9% 100.0%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.70e-01 96.9% 94.6%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 40.0 2.53e-01 86.2% 17.0%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 3.21e-01 96.9% 41.0%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.83e-01 98.5% 96.9%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.83e-01 98.5% 92.9%
2kmwA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 3.78e-01 98.5% 95.2%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.83e-01 100.0% 94.7%
2uuqA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 43.0 2.69e-01 100.0% 74.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 42.0 3.60e-01 100.0% 56.9%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.60e-01 89.2% 99.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4656484 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.66 55.0 4.23e-01 93.8% 50.7%
3966871 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 55.0 4.40e-01 93.8% 59.2%
3814098 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.63 48.0 4.41e-01 86.2% 68.9%
5012485 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.61 44.0 4.26e-01 78.5% 77.3%
3647116 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.60 53.0 4.28e-01 100.0% 73.6%
3959017 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 42.0 2.54e-01 73.8% 11.6%
4089169 1170.1.1.0 ↗ beta barrels › IL8-related › IL8-related › IL8 0.59 44.0 4.23e-01 80.0% 72.0%
3672600 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.99e-01 90.8% 87.6%
4489855 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.57 44.0 4.22e-01 87.7% 72.2%
5004221 5.1.5.234 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › LVIVD 0.56 39.0 2.51e-01 86.2% 14.2%
3939569 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 42.0 3.83e-01 80.0% 76.5%
3398586 214.1.1.7 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.56 49.0 3.93e-01 96.9% 64.0%
3105679 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.29e-01 98.5% 98.9%
3536274 220.1.1.55 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SYCP2_SLD 0.55 47.0 3.90e-01 100.0% 52.5%
3401290 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 41.0 3.36e-01 80.0% 55.8%
3480379 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 46.0 3.95e-01 95.4% 75.2%
3627506 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 41.0 3.44e-01 80.0% 61.8%
3441929 5.1.4.44 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1_2 0.54 44.0 2.87e-01 90.8% 87.9%
4017602 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.54 44.0 3.56e-01 92.3% 55.4%
3638826 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.54 44.0 3.20e-01 92.3% 37.9%
3494009 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 40.0 3.59e-01 80.0% 71.1%
3380753 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 39.0 3.58e-01 80.0% 75.6%
3515632 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 39.0 3.23e-01 80.0% 54.2%
3464766 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 39.0 3.09e-01 80.0% 50.4%
3929989 330.16.1.2 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP 0.51 44.0 4.11e-01 98.5% 83.5%
3393467 2.1.1.105 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.51 41.0 3.28e-01 90.8% 68.6%
3719200 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.51 40.0 2.59e-01 87.7% 77.2%
4947823 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 44.0 3.87e-01 100.0% 88.0%
4945480 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.70e-01 98.5% 95.2%
3932481 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.50 44.0 3.52e-01 98.5% 58.5%
3452542 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.50 43.0 3.68e-01 95.4% 67.6%
3939011 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 43.0 3.74e-01 100.0% 88.6%
3927497 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.50 44.0 4.14e-01 100.0% 97.5%