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NC_048046.1__YP_009809409.1__HOU00_gp346__00240

Bact-Vir

NC_048046.1__YP_009809409.1__HOU00_gp346__00240

Identity

Accession:
NC_048046 ↗
Kingdom:
phage

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-73
PDB
D2 high residues 76-158
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.77 55.0 5.12e-01 74.7% 86.4%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 56.0 4.89e-01 83.1% 98.4%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 50.0 5.48e-01 81.9% 98.5%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 52.0 4.21e-01 80.7% 95.6%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 51.0 4.25e-01 79.5% 91.2%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.68 52.0 4.37e-01 81.9% 93.1%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 52.0 4.42e-01 79.5% 91.5%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 52.0 4.44e-01 80.7% 99.2%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 51.0 4.38e-01 80.7% 92.5%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 51.0 4.62e-01 80.7% 96.3%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.50e-01 91.6% 90.3%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.66 52.0 4.35e-01 85.5% 59.2%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 4.10e-01 80.7% 82.2%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 48.0 4.24e-01 79.5% 89.5%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.64 52.0 4.16e-01 89.2% 51.2%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 47.0 4.23e-01 78.3% 90.0%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 4.18e-01 81.9% 87.3%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.29e-01 84.3% 96.1%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 3.97e-01 81.9% 77.6%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 4.30e-01 81.9% 99.2%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 43.0 4.43e-01 75.9% 75.3%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 48.0 3.34e-01 84.3% 94.5%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 48.0 4.08e-01 85.5% 57.6%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 4.14e-01 77.1% 98.2%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 4.69e-01 74.7% 96.8%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.61 43.0 3.64e-01 75.9% 51.4%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 53.0 3.59e-01 100.0% 80.4%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 53.0 3.63e-01 100.0% 80.0%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 50.0 3.38e-01 94.0% 53.2%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 49.0 3.51e-01 92.8% 57.6%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 50.0 3.31e-01 96.4% 60.8%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 52.0 3.43e-01 100.0% 64.9%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 51.0 3.49e-01 100.0% 83.3%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 50.0 3.55e-01 100.0% 88.7%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 50.0 3.42e-01 100.0% 75.4%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 3.44e-01 78.3% 91.1%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 4.01e-01 91.6% 92.2%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 40.0 3.36e-01 77.1% 46.7%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.37e-01 100.0% 88.7%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.55 41.0 2.88e-01 81.9% 81.4%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.31e-01 77.1% 64.8%
1viuC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 42.0 3.38e-01 88.0% 48.3%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 43.0 3.30e-01 90.4% 43.3%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 3.16e-01 85.5% 86.2%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 39.0 3.09e-01 86.7% 85.1%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.41e-01 80.7% 66.9%
3rriA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 32.0 2.82e-01 71.1% 40.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244404 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.70 54.0 4.74e-01 81.9% 98.4%
4383836 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.70 55.0 3.77e-01 84.3% 93.0%
4969137 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 49.0 5.27e-01 74.7% 97.1%
3216464 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.67 52.0 4.53e-01 81.9% 99.2%
4443617 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.67 52.0 3.58e-01 84.3% 91.8%
3974591 7026.1.1.21 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › YhdP 0.67 51.0 3.53e-01 83.1% 48.5%
3240257 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.67 47.0 4.35e-01 73.5% 100.0%
4283763 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.66 51.0 3.54e-01 84.3% 95.1%
3587060 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 47.0 4.96e-01 77.1% 98.7%
3969970 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.64 48.0 5.01e-01 79.5% 98.7%
3227200 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.64 50.0 3.95e-01 84.3% 62.3%
138908 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.64 47.0 4.23e-01 78.3% 90.0%
4500806 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.64 50.0 3.43e-01 84.3% 92.7%
4088781 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.64 48.0 3.80e-01 80.7% 66.1%
3280401 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.64 45.0 4.89e-01 75.9% 93.8%
3987244 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.63 49.0 3.38e-01 83.1% 67.7%
4660347 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.63 49.0 3.40e-01 85.5% 91.5%
5078475 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 49.0 4.07e-01 83.1% 57.2%
6398 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.63 48.0 4.32e-01 83.1% 99.2%
1887056 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 48.0 4.26e-01 81.9% 87.5%
3977248 5084.5.2.6 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › YhdP 0.62 48.0 3.35e-01 84.3% 47.6%
4046546 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.61 47.0 3.29e-01 84.3% 93.5%
5033517 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.61 44.0 4.14e-01 75.9% 100.0%
6422 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.61 42.0 4.69e-01 74.7% 96.8%
4104010 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.61 43.0 4.16e-01 74.7% 100.0%
3716605 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 48.0 3.92e-01 86.7% 56.9%
3587129 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 43.0 4.65e-01 78.3% 95.4%
4298119 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.60 49.0 3.40e-01 90.4% 95.7%
3286982 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.60 43.0 4.02e-01 74.7% 65.4%
4117325 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.60 44.0 3.83e-01 78.3% 72.3%
4941093 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 48.0 3.99e-01 88.0% 51.3%
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.60 44.0 4.03e-01 78.3% 70.0%
4403418 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.59 45.0 3.19e-01 84.3% 93.2%
4030163 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 42.0 3.96e-01 75.9% 85.7%
4952863 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 45.0 3.94e-01 85.5% 57.8%
3963149 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.58 43.0 3.86e-01 78.3% 79.1%
144144 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.58 50.0 3.29e-01 100.0% 75.1%
4951451 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 44.0 3.76e-01 85.5% 57.9%
4946188 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 42.0 4.30e-01 79.5% 97.5%
4974235 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 46.0 3.68e-01 88.0% 55.2%
3965522 5084.5.2.5 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › DUF945 0.56 42.0 2.72e-01 79.5% 22.5%
43384 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.56 48.0 3.38e-01 98.8% 68.7%
5016167 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.56 45.0 3.66e-01 90.4% 87.1%
3607605 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.55 46.0 3.43e-01 92.8% 59.1%
3719388 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.54 46.0 3.47e-01 100.0% 98.7%
4879628 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 44.0 3.32e-01 90.4% 46.3%
4344957 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.53 39.0 3.68e-01 79.5% 71.4%
3949238 7579.1.1.34 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Tannase 0.53 43.0 2.69e-01 90.4% 17.3%
4997106 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 38.0 3.48e-01 75.9% 57.4%
1247750 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 43.0 3.40e-01 90.4% 50.0%
5006851 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 37.0 3.86e-01 78.3% 90.5%
None 0.51 39.0 2.70e-01 81.9% 26.6%
3214133 4059.1.1.0 a+b complex topology › Serpins › Serpins › Serpins 0.51 41.0 2.78e-01 94.0% 80.0%