←Back to structures

NC_048046.1__YP_009809420.1__HOU00_gp335__00251

Bact-Vir

NC_048046.1__YP_009809420.1__HOU00_gp335__00251

Identity

Accession:
NC_048046 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrPW

TaxID: 2283271

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-157
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.85 58.0 4.58e-01 100.0% 37.4%
2ht1A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 3.31e-01 83.6% 99.6%
4ms4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 35.0 2.97e-01 100.0% 41.9%
4g3hC00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.50 37.0 2.77e-01 79.1% 85.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4556738 7503.1.1.1 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.90 86.0 6.40e-01 100.0% 47.5%
2628866 7503.1.1.1 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.78 72.0 5.34e-01 100.0% 42.0%
3968198 7503.1.1.1 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.71 57.0 4.62e-01 100.0% 46.5%
3206658 2007.1.6.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH 0.60 42.0 3.97e-01 100.0% 60.0%
3662429 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.57 42.0 4.04e-01 100.0% 65.4%
3593248 2007.1.6.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain 0.57 42.0 4.10e-01 100.0% 70.8%
4677221 2007.1.6.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH 0.56 42.0 4.14e-01 100.0% 73.9%
4520770 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.56 38.0 3.33e-01 86.4% 46.1%
4936159 2486.1.1.5 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.54 44.0 3.41e-01 88.2% 96.0%
4093291 2007.1.6.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH 0.53 39.0 4.05e-01 100.0% 81.0%
5027141 7575.1.1.2 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C25 0.51 40.0 3.14e-01 86.4% 69.4%
4170294 2007.1.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.50 31.0 2.86e-01 77.3% 47.9%
D2 medium residues 158-186_208-238
PDB
Domain cluster: representative
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.79 69.0 5.08e-01 96.7% 38.2%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.78 68.0 4.25e-01 95.0% 21.1%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.77 52.0 5.28e-01 70.0% 76.3%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.75 65.0 4.99e-01 95.0% 45.1%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 65.0 5.06e-01 96.7% 45.0%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 63.0 4.86e-01 93.3% 46.6%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 64.0 4.81e-01 95.0% 47.9%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 61.0 4.29e-01 95.0% 29.3%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.73 53.0 3.83e-01 76.7% 31.3%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 62.0 4.65e-01 93.3% 46.9%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 64.0 4.76e-01 98.3% 48.6%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.72 60.0 4.38e-01 90.0% 36.4%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.72 50.0 5.13e-01 75.0% 77.2%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 60.0 4.60e-01 93.3% 48.9%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.71 61.0 4.33e-01 95.0% 34.5%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.71 57.0 4.26e-01 86.7% 38.2%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 59.0 4.73e-01 93.3% 50.0%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 57.0 4.14e-01 91.7% 35.2%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.70 59.0 3.57e-01 93.3% 14.3%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 59.0 4.63e-01 95.0% 51.5%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.70 55.0 4.43e-01 88.3% 50.0%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 58.0 4.69e-01 96.7% 47.9%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.70 58.0 3.90e-01 93.3% 32.9%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.70 58.0 3.95e-01 93.3% 26.7%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.69 59.0 4.56e-01 96.7% 44.4%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.69 59.0 4.43e-01 96.7% 48.7%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 58.0 4.63e-01 95.0% 52.1%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 57.0 4.38e-01 96.7% 39.9%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 57.0 4.40e-01 93.3% 48.1%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 57.0 4.61e-01 96.7% 47.2%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.68 55.0 3.61e-01 95.0% 95.6%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.68 53.0 4.27e-01 88.3% 47.2%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.67 54.0 4.84e-01 96.7% 62.1%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.67 58.0 4.62e-01 98.3% 65.0%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 55.0 3.71e-01 91.7% 48.1%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.67 52.0 3.81e-01 83.3% 70.0%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 56.0 4.46e-01 95.0% 51.2%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.67 56.0 3.93e-01 91.7% 32.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.67 53.0 4.42e-01 95.0% 50.0%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 53.0 4.85e-01 91.7% 67.1%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 54.0 4.35e-01 95.0% 53.1%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.29e-01 95.0% 46.3%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 55.0 3.65e-01 98.3% 33.2%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.65 53.0 3.77e-01 90.0% 31.9%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.65 46.0 3.77e-01 75.0% 67.3%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 53.0 4.21e-01 93.3% 48.1%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.65 57.0 3.86e-01 100.0% 83.8%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 48.0 3.75e-01 81.7% 77.0%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 52.0 4.31e-01 95.0% 48.2%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 51.0 4.11e-01 95.0% 51.6%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.63 52.0 3.86e-01 95.0% 40.0%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 44.0 3.05e-01 73.3% 85.3%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.02e-01 93.3% 40.7%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.63 52.0 3.44e-01 93.3% 34.5%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 52.0 4.16e-01 95.0% 82.3%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.32e-01 96.7% 52.3%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 4.01e-01 95.0% 81.5%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.21e-01 93.3% 16.6%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.61 48.0 4.27e-01 88.3% 62.6%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 4.05e-01 88.3% 49.5%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 4.14e-01 86.7% 84.3%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.60 52.0 3.81e-01 98.3% 43.8%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 45.0 4.10e-01 86.7% 60.7%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 47.0 3.57e-01 96.7% 38.7%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.65e-01 78.3% 83.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.56 42.0 4.28e-01 88.3% 91.1%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.55 48.0 3.49e-01 96.7% 53.0%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.73e-01 88.3% 80.8%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.64e-01 96.7% 82.4%
2f20A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.54 40.0 2.85e-01 86.7% 91.0%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3405242 5084.5.1.37 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.81 72.0 4.99e-01 98.3% 31.7%
2362 71.2.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.81 65.0 4.51e-01 90.0% 28.0%
4254174 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.80 69.0 5.11e-01 95.0% 42.1%
3512269 79.1.1.16 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.79 63.0 5.43e-01 85.0% 64.4%
6334 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.79 69.0 5.13e-01 96.7% 39.5%
3391818 3070.2.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain 0.77 67.0 5.64e-01 95.0% 67.7%
4466226 5087.1.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.76 58.0 4.78e-01 90.0% 46.7%
3839454 5084.5.1.25 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › HP_OMP_2 0.76 68.0 4.03e-01 100.0% 37.2%
3945644 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.76 68.0 4.02e-01 100.0% 13.9%
3712361 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.75 64.0 4.90e-01 96.7% 45.0%
376518 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.75 63.0 4.86e-01 93.3% 46.6%
4025923 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.75 62.0 5.66e-01 96.7% 68.8%
5047424 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.75 62.0 4.98e-01 93.3% 85.0%
4675848 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.75 64.0 4.85e-01 95.0% 43.2%
5025335 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.74 60.0 4.21e-01 88.3% 85.4%
3283330 331.3.1.20 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.74 65.0 4.25e-01 98.3% 23.1%
3989344 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.73 61.0 4.83e-01 96.7% 44.8%
3258590 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.73 59.0 5.01e-01 96.7% 54.7%
4977257 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.73 55.0 3.62e-01 81.7% 32.8%
3576360 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.72 63.0 4.53e-01 98.3% 35.4%
3251351 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.72 61.0 4.86e-01 93.3% 49.2%
4963909 4295.1.1.2 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › DUF2071 0.71 60.0 4.05e-01 95.0% 50.0%
3650990 274.1.1.44 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.71 61.0 4.77e-01 96.7% 51.5%
4965879 881.1.1.44 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.71 49.0 3.52e-01 73.3% 33.5%
3234838 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.71 60.0 4.77e-01 93.3% 48.3%
5047928 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.71 62.0 4.93e-01 98.3% 84.2%
3606418 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.71 60.0 4.10e-01 95.0% 62.2%
4943345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 58.0 4.99e-01 100.0% 57.0%
3959925 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.70 60.0 5.03e-01 93.3% 58.0%
1569520 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.70 53.0 3.50e-01 81.7% 30.0%
3818701 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 58.0 4.61e-01 91.7% 50.8%
3623481 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.70 58.0 4.04e-01 91.7% 30.0%
3836347 243.3.1.26 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.70 59.0 4.70e-01 96.7% 52.0%
3502994 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 57.0 4.46e-01 91.7% 43.8%
2765234 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.69 59.0 5.09e-01 96.7% 62.9%
3769924 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.69 58.0 4.59e-01 96.7% 53.8%
5034702 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.69 56.0 4.14e-01 88.3% 37.6%
3228525 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.69 58.0 4.74e-01 95.0% 50.9%
5016100 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.69 58.0 4.14e-01 95.0% 34.1%
3280394 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 58.0 4.58e-01 95.0% 48.0%
3606839 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 57.0 4.49e-01 95.0% 46.2%
6689 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.68 57.0 4.53e-01 95.0% 50.0%
3607351 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 56.0 4.38e-01 95.0% 41.5%
3277629 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 55.0 4.42e-01 93.3% 48.0%
3402087 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.67 54.0 3.97e-01 98.3% 32.4%
3252796 883.1.1.22 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26547 0.67 56.0 3.94e-01 96.7% 52.2%
3615537 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.67 55.0 4.29e-01 96.7% 69.7%
3921483 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.67 53.0 3.38e-01 98.3% 17.6%
3972133 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.67 52.0 3.49e-01 91.7% 21.3%
4104949 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 45.0 3.84e-01 91.7% 41.0%
3613168 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.66 55.0 3.38e-01 95.0% 14.9%
2516709 881.1.1.6 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.66 53.0 3.91e-01 91.7% 34.1%
5045702 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.66 49.0 3.28e-01 81.7% 33.6%
4011390 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 55.0 4.26e-01 96.7% 44.8%
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 54.0 4.02e-01 91.7% 36.8%
4977218 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 54.0 3.41e-01 95.0% 27.8%
4013024 5.1.4.249 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.65 54.0 3.25e-01 96.7% 13.6%
1887056 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 53.0 4.32e-01 96.7% 47.5%
3578918 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.64 51.0 4.01e-01 88.3% 40.0%
2724186 243.1.1.67 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.64 53.0 4.28e-01 95.0% 46.7%
4025220 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.64 52.0 3.25e-01 93.3% 30.4%
3400605 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.63 52.0 4.58e-01 91.7% 62.2%
4948454 3053.1.1.1 ↗ beta barrels › barrel domain in putative modulator of DNA gyrase, PmbA/TldD › barrel domain in putative modulator of DNA gyrase, PmbA/TldD › barrel domain in putative modulator of DNA gyrase, PmbA/TldD › PmbA_TldD_3rd 0.63 54.0 3.60e-01 95.0% 30.9%
4953511 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.63 57.0 3.84e-01 100.0% 78.1%
3301984 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 49.0 5.07e-01 85.0% 96.4%
1502527 5089.1.1.4 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF_1 0.62 51.0 3.23e-01 90.0% 51.0%
1807441 243.1.1.37 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcpC-like_C 0.62 52.0 4.32e-01 96.7% 52.3%
3265334 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.62 45.0 3.84e-01 86.7% 44.5%
4927927 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.62 55.0 4.46e-01 98.3% 72.7%
2883156 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.61 50.0 4.02e-01 95.0% 45.5%
3554713 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 50.0 3.05e-01 96.7% 13.4%
4883064 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 46.0 3.19e-01 90.0% 23.0%
3607354 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.59 48.0 3.82e-01 100.0% 42.0%
5010189 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 46.0 3.73e-01 98.3% 41.7%
4160858 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.57 47.0 3.68e-01 98.3% 61.7%
5049570 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 45.0 3.07e-01 93.3% 77.0%
3285689 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.53 40.0 3.60e-01 90.0% 76.0%
3276491 12.2.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › UPF0556 0.53 44.0 3.51e-01 98.3% 44.5%
3789933 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 41.0 3.63e-01 95.0% 58.1%
4951804 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 44.0 3.47e-01 100.0% 71.4%
D3 medium residues 187-207_239-281
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d5sB00 2.10.310.10 Mainly Beta › Ribbon › Serpins fold › Serpins superfamily 0.81 33.0 4.19e-01 98.4% 63.4%
1bmlC03 3.10.20.150 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 46.0 4.18e-01 75.0% 61.4%
5vbfA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.63 47.0 3.02e-01 78.1% 38.2%
7pikC01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 45.0 3.14e-01 76.6% 88.9%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.58 41.0 3.01e-01 75.0% 94.2%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 48.0 3.97e-01 98.4% 55.4%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.55 39.0 4.00e-01 75.0% 83.3%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.55 39.0 3.45e-01 75.0% 85.3%
3bk2A03 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 45.0 3.96e-01 93.8% 69.7%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.55 46.0 4.18e-01 95.3% 96.6%
7vhqU01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.55 47.0 4.00e-01 100.0% 84.5%
2zuoA10 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.54 44.0 3.83e-01 100.0% 89.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.37e-01 95.3% 62.0%
3s8sA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 40.0 3.46e-01 85.9% 95.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4831615 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.77 31.0 4.31e-01 96.9% 75.0%
4785460 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.76 32.0 4.45e-01 93.8% 78.8%
4772436 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.75 33.0 4.48e-01 100.0% 79.4%
4792646 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.75 33.0 4.25e-01 100.0% 71.1%
4600109 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.73 49.0 3.82e-01 70.3% 42.1%
3983782 2484.1.1.119 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.72 42.0 3.74e-01 70.3% 39.4%
3983036 2484.1.1.119 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.72 42.0 4.25e-01 70.3% 56.9%
4774023 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.71 31.0 4.04e-01 98.4% 74.3%
5007359 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.69 45.0 4.36e-01 70.3% 60.0%
3703366 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 47.0 3.17e-01 75.0% 52.2%
3788608 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.66 49.0 3.05e-01 78.1% 87.3%
3869558 194.1.1.1 ↗ alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.64 57.0 4.00e-01 98.4% 82.6%
2061471 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.63 47.0 3.10e-01 78.1% 43.5%
3997409 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.60 44.0 2.97e-01 76.6% 38.3%
4988512 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.58 42.0 3.07e-01 100.0% 27.5%
4998056 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.58 47.0 3.64e-01 92.2% 92.3%
1717142 4033.1.1.6 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › AidB_N 0.58 44.0 3.29e-01 84.4% 53.4%
3698946 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.56 43.0 2.93e-01 85.9% 70.1%
3319045 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 3.60e-01 70.3% 77.3%
3215476 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.54 38.0 3.34e-01 76.6% 92.0%
3923045 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.53 45.0 2.74e-01 93.8% 50.1%
3475905 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.53 44.0 2.66e-01 93.8% 44.5%
5019594 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.52 33.0 3.31e-01 70.3% 63.1%
4230630 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.52 43.0 3.58e-01 90.6% 66.4%
3283276 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 39.0 2.90e-01 85.9% 44.3%
5017732 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.51 44.0 2.86e-01 93.8% 56.7%
5073914 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 46.0 3.68e-01 100.0% 64.8%
3591691 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 41.0 3.57e-01 85.9% 94.7%