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NC_048046.1__YP_009809427.1__HOU00_gp328__00258
Bact-VirNC_048046.1__YP_009809427.1__HOU00_gp328__00258
Identity
- Accession:
- NC_048046 ↗
- Kingdom:
- phage
Quality
58.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Colossusvirus›
Caulobacter_phage_CcrPW
TaxID: 2283271
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-84
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6cy5A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.64 | 44.0 | 4.19e-01 | 100.0% | 59.6% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.63 | 49.0 | 4.04e-01 | 87.7% | 59.0% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.62 | 43.0 | 4.01e-01 | 72.6% | 64.1% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.61 | 52.0 | 4.60e-01 | 100.0% | 96.5% |
| 6lkzC01 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.61 | 52.0 | 3.30e-01 | 95.9% | 94.6% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.60 | 45.0 | 3.82e-01 | 80.8% | 68.0% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.60 | 44.0 | 3.29e-01 | 100.0% | 31.0% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 39.0 | 3.46e-01 | 71.2% | 45.5% |
| 1ikpA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.59 | 47.0 | 3.68e-01 | 87.7% | 92.4% |
| 8amqA02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 45.0 | 2.84e-01 | 82.2% | 80.9% |
| 1vsgA02 | 1.10.470.10 | Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 | 0.58 | 45.0 | 3.54e-01 | 83.6% | 84.9% |
| 5eroA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 50.0 | 3.39e-01 | 100.0% | 45.8% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.58 | 42.0 | 4.21e-01 | 80.8% | 74.7% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.58 | 43.0 | 3.99e-01 | 80.8% | 88.4% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 37.0 | 3.77e-01 | 78.1% | 65.8% |
| 4p3fA00 | 1.10.3450.40 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain | 0.57 | 43.0 | 3.19e-01 | 80.8% | 34.2% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 41.0 | 3.60e-01 | 78.1% | 94.6% |
| 2pgsA03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.56 | 49.0 | 4.46e-01 | 97.3% | 90.7% |
| 5jfqB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 46.0 | 3.15e-01 | 100.0% | 52.0% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 45.0 | 4.07e-01 | 100.0% | 65.1% |
| 3oqiA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.55 | 47.0 | 3.42e-01 | 100.0% | 68.5% |
| 6kd7A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 46.0 | 3.06e-01 | 98.6% | 47.1% |
| 2eo5A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 37.0 | 2.60e-01 | 72.6% | 44.3% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.54 | 45.0 | 3.54e-01 | 95.9% | 81.1% |
| 1v4eA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 45.0 | 3.17e-01 | 100.0% | 53.9% |
| 6grjB01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.53 | 41.0 | 2.70e-01 | 82.2% | 77.9% |
| 3tc1B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 46.0 | 3.06e-01 | 98.6% | 44.9% |
| 3s1sA02 | 3.40.50.12420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 39.0 | 2.52e-01 | 80.8% | 41.3% |
| 1g6hA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.19e-01 | 98.6% | 33.1% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 45.0 | 4.12e-01 | 100.0% | 97.1% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 46.0 | 3.14e-01 | 100.0% | 88.4% |
| 3ucaA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 43.0 | 3.06e-01 | 100.0% | 55.5% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 45.0 | 4.16e-01 | 100.0% | 85.6% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.51 | 39.0 | 3.01e-01 | 87.7% | 97.4% |
| 1tdzA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 44.0 | 3.62e-01 | 95.9% | 54.5% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.51 | 37.0 | 3.69e-01 | 78.1% | 84.2% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 42.0 | 3.94e-01 | 95.9% | 81.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3686724 | 7516.1.1.51 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_21 | 0.75 | 54.0 | 3.25e-01 | 76.7% | 19.6% |
| 3838282 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 51.0 | 4.69e-01 | 76.7% | 83.2% |
| 3596697 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.66 | 59.0 | 5.17e-01 | 100.0% | 73.6% |
| 3480617 | 7073.1.1.0 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme | 0.66 | 55.0 | 4.81e-01 | 100.0% | 60.0% |
| 4967072 | 5067.1.1.12 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › UPF0014 | 0.66 | 58.0 | 4.35e-01 | 100.0% | 39.5% |
| 4520394 | 5063.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK | 0.66 | 48.0 | 4.92e-01 | 79.5% | 81.2% |
| 3184752 | 620.1.1.4 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 | 0.65 | 47.0 | 3.60e-01 | 76.7% | 99.4% |
| 4660991 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.63 | 56.0 | 3.92e-01 | 100.0% | 30.8% |
| 3563296 | 148.1.3.46 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6-ORC-like_ATPase_lid | 0.63 | 55.0 | 5.02e-01 | 100.0% | 77.0% |
| 3428005 | 109.4.1.450 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 | 0.61 | 53.0 | 3.59e-01 | 100.0% | 46.7% |
| 4936461 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.61 | 50.0 | 5.03e-01 | 95.9% | 90.7% |
| 3716495 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.60 | 53.0 | 3.82e-01 | 98.6% | 38.0% |
| 3203655 | 601.16.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase | 0.60 | 45.0 | 3.62e-01 | 79.5% | 85.7% |
| 2523883 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.60 | 51.0 | 4.67e-01 | 98.6% | 80.4% |
| 4225289 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.60 | 52.0 | 4.52e-01 | 98.6% | 66.1% |
| 3679942 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.59 | 52.0 | 3.39e-01 | 100.0% | 92.8% |
| 3283519 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 50.0 | 4.33e-01 | 100.0% | 75.0% |
| 5055139 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.57 | 39.0 | 3.28e-01 | 72.6% | 71.9% |
| 4238557 | 1188.1.1.3 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp | 0.57 | 45.0 | 3.42e-01 | 87.7% | 91.1% |
| 3266150 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.56 | 43.0 | 3.62e-01 | 87.7% | 95.7% |
| 3597099 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.56 | 42.0 | 3.35e-01 | 80.8% | 86.7% |
| 4983940 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.55 | 39.0 | 3.25e-01 | 74.0% | 60.7% |
| 3731128 | 5051.1.1.9 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur | 0.55 | 46.0 | 2.88e-01 | 100.0% | 84.6% |
| 3692508 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.55 | 47.0 | 4.31e-01 | 98.6% | 88.0% |
| 3720809 | 5038.2.1.1 ↗ | alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG | 0.54 | 46.0 | 3.89e-01 | 98.6% | 70.8% |
| 3386452 | 5050.1.1.21 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FTR1 | 0.53 | 38.0 | 3.08e-01 | 76.7% | 70.3% |
| 3253767 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.53 | 39.0 | 3.05e-01 | 78.1% | 71.6% |
| 4046090 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.52 | 43.0 | 3.00e-01 | 97.3% | 69.3% |
| 3440903 | 5059.1.1.34 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp | 0.52 | 42.0 | 2.80e-01 | 89.0% | 22.5% |
| 5012738 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.52 | 45.0 | 3.29e-01 | 100.0% | 38.4% |
| 4100091 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 46.0 | 3.18e-01 | 100.0% | 87.1% |
| 3226564 | 5054.1.1.58 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › YVC1_C | 0.51 | 40.0 | 2.59e-01 | 84.9% | 85.1% |
| 3590231 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.51 | 45.0 | 4.04e-01 | 100.0% | 80.0% |
| 3721449 | 7076.1.1.0 ↗ | 0.51 | 44.0 | 4.22e-01 | 97.3% | 89.4% | |
| 4367450 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.51 | 42.0 | 3.01e-01 | 97.3% | 32.0% |
| 3911035 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.51 | 40.0 | 3.27e-01 | 91.8% | 94.2% |
D2
high
residues 89-147_161-190