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NC_048046.1__YP_009809596.1__HOU00_gp159__00427

Bact-Vir

NC_048046.1__YP_009809596.1__HOU00_gp159__00427

Identity

Accession:
NC_048046 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-87
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 6.08e-01 100.0% 98.4%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.97e-01 98.8% 96.9%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 4.40e-01 100.0% 50.0%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 3.94e-01 98.8% 36.9%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.25e-01 100.0% 46.3%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.71e-01 100.0% 98.4%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.31e-01 98.8% 81.8%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.26e-01 100.0% 47.7%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 5.43e-01 97.6% 98.3%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.12e-01 98.8% 45.6%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 3.92e-01 100.0% 40.5%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.38e-01 100.0% 52.8%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.06e-01 100.0% 44.4%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.07e-01 100.0% 46.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.76e-01 100.0% 66.0%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 3.98e-01 100.0% 44.7%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.66 51.0 5.41e-01 100.0% 97.1%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.90e-01 100.0% 76.5%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.82e-01 100.0% 73.6%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.08e-01 98.8% 47.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.10e-01 100.0% 46.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.66e-01 100.0% 64.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.60e-01 100.0% 63.8%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 5.27e-01 98.8% 97.0%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.12e-01 100.0% 51.2%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 5.12e-01 100.0% 87.2%
2wapA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.61 52.0 3.18e-01 93.9% 42.9%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.73e-01 100.0% 87.5%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.61 51.0 4.79e-01 92.7% 92.1%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.46e-01 100.0% 66.0%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 43.0 4.54e-01 100.0% 87.1%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.60 43.0 4.49e-01 100.0% 84.9%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.60 49.0 4.99e-01 98.8% 90.1%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 40.0 4.66e-01 76.8% 95.0%
3qfhA01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.60 32.0 3.52e-01 76.8% 63.1%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.18e-01 100.0% 60.7%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 42.0 3.97e-01 100.0% 60.6%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.54e-01 100.0% 71.4%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 53.0 4.54e-01 100.0% 78.0%
1r6vA02 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.55 34.0 3.54e-01 96.3% 65.4%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.54 49.0 4.60e-01 100.0% 91.8%
3afgB01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.54 37.0 3.73e-01 89.0% 69.0%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.98e-01 93.9% 82.4%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 3.19e-01 90.2% 68.3%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 46.0 4.00e-01 98.8% 90.5%
4pcaB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 41.0 3.12e-01 93.9% 42.2%
1wycA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 37.0 2.73e-01 79.3% 90.9%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 34.0 3.33e-01 85.4% 60.4%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.50 43.0 3.74e-01 95.1% 97.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602284 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 49.0 4.89e-01 100.0% 64.7%
4388536 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.74 55.0 6.15e-01 100.0% 98.5%
4931659 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 5.25e-01 100.0% 72.9%
3285968 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.72 54.0 4.36e-01 100.0% 43.9%
3279462 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.71 53.0 4.26e-01 100.0% 43.4%
3446454 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.76e-01 97.6% 86.3%
3290295 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.70 53.0 4.26e-01 100.0% 43.3%
4969310 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.70 49.0 3.94e-01 100.0% 38.7%
4980206 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 5.12e-01 100.0% 76.2%
5062261 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.69 49.0 4.60e-01 100.0% 61.0%
5039328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 5.26e-01 100.0% 87.1%
5059035 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.68 48.0 4.72e-01 100.0% 67.8%
5083337 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 51.0 4.88e-01 100.0% 68.4%
3784067 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 53.0 4.63e-01 100.0% 56.7%
5073308 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.26e-01 100.0% 83.7%
5066463 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.67 50.0 5.57e-01 100.0% 100.0%
5025382 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 5.34e-01 100.0% 94.1%
3721121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.54e-01 100.0% 62.0%
1289805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.49e-01 100.0% 97.1%
3405208 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 5.32e-01 100.0% 86.3%
4943921 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 49.0 4.83e-01 98.8% 74.1%
4157944 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.66 55.0 5.76e-01 98.8% 97.3%
5068034 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.29e-01 98.8% 55.7%
4960424 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 5.36e-01 98.8% 100.0%
3952549 191.1.1.41 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › EthR_C 0.65 44.0 3.80e-01 92.7% 45.6%
1291586 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.65 48.0 4.00e-01 100.0% 46.0%
4939140 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.65 50.0 5.35e-01 100.0% 97.1%
5067388 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 4.82e-01 100.0% 78.8%
4999184 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 5.32e-01 98.8% 100.0%
4934328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 5.23e-01 100.0% 94.3%
4228350 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.64 46.0 5.11e-01 96.3% 95.4%
3395627 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 43.0 4.50e-01 100.0% 78.7%
3254841 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.63 56.0 5.11e-01 100.0% 75.2%
4985744 101.1.2.901 alpha arrays › HTH › HTH › winged helix domain › HTH_28 0.63 48.0 5.03e-01 98.8% 89.3%
5063200 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.87e-01 100.0% 81.2%
5070343 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.58e-01 100.0% 73.3%
3321720 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.62 48.0 4.43e-01 100.0% 63.6%
3875839 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.61 53.0 4.76e-01 100.0% 67.8%
4370509 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 45.0 4.47e-01 100.0% 75.3%
5030899 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 5.06e-01 100.0% 95.7%
3581108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 56.0 4.86e-01 100.0% 67.5%
4363314 101.1.2.485 alpha arrays › HTH › HTH › winged helix domain › DUF2513 0.61 46.0 4.19e-01 100.0% 59.1%
3515049 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.61 54.0 4.54e-01 100.0% 77.9%
5000271 2002.1.1.414 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Wyosine_form 0.60 50.0 3.42e-01 93.9% 29.8%
4648744 4070.1.1.3 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › DUF3267 0.60 46.0 3.71e-01 84.1% 55.2%
4648749 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.60 47.0 4.11e-01 97.6% 57.5%
5029883 2002.1.1.414 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Wyosine_form 0.59 48.0 3.31e-01 93.9% 31.7%
3167163 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.59 49.0 4.66e-01 100.0% 78.9%
4019210 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.58 44.0 4.63e-01 100.0% 95.7%
3429589 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 49.0 4.02e-01 100.0% 52.4%
3287243 304.164.1.1 a+b two layers › Alpha-beta plaits › Hypothetical protein NegoA.19184.a C-terminal domain › Hypothetical protein NegoA.19184.a C-terminal domain › DUF4265 0.57 37.0 3.85e-01 90.2% 70.7%
5058906 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.82e-01 98.8% 93.8%
5060543 2002.1.1.414 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Wyosine_form 0.57 49.0 3.38e-01 100.0% 74.9%
3343069 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.57 48.0 4.31e-01 100.0% 67.8%
4026780 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 31.0 3.39e-01 87.8% 62.9%
3806096 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 49.0 4.20e-01 100.0% 60.0%
4369479 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.56 43.0 3.85e-01 100.0% 58.3%
4108761 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 48.0 3.92e-01 100.0% 51.3%
3667879 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 48.0 4.42e-01 100.0% 74.3%
3232477 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.53 41.0 3.89e-01 100.0% 69.0%
4387157 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.53 37.0 3.77e-01 92.7% 75.0%
3601472 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 49.0 4.39e-01 100.0% 79.1%
3426878 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 45.0 4.20e-01 100.0% 77.0%
3645078 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 43.0 3.93e-01 100.0% 70.0%
3652534 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.50 42.0 3.60e-01 100.0% 55.7%