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NC_048047.1__YP_009809682.1__HOU02_gp028__00028

Bact-Vir

NC_048047.1__YP_009809682.1__HOU02_gp028__00028

Identity

Accession:
NC_048047 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrBL9

TaxID: 2283270

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-97
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.76 38.0 4.70e-01 75.8% 75.4%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.62 45.0 4.18e-01 90.5% 60.5%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 36.0 4.51e-01 76.8% 94.9%
2g2dA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.60 37.0 3.06e-01 78.9% 36.3%
5dlqB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 53.0 3.43e-01 100.0% 25.4%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.59 47.0 4.40e-01 90.5% 69.2%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.58 39.0 3.99e-01 70.5% 70.5%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.57 50.0 4.46e-01 93.7% 79.8%
2zcxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 39.0 3.08e-01 71.6% 70.2%
3tdoA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.56 46.0 3.42e-01 90.5% 82.1%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 42.0 3.97e-01 77.9% 72.7%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 40.0 4.10e-01 90.5% 78.0%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 49.0 3.67e-01 95.8% 63.3%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 42.0 3.77e-01 81.1% 73.3%
2qr4A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.54 45.0 3.82e-01 90.5% 69.2%
3lxzB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 43.0 3.77e-01 85.3% 68.8%
1rc2A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.53 44.0 3.41e-01 93.7% 74.0%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.52 28.0 3.45e-01 81.1% 86.0%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 40.0 3.80e-01 81.1% 75.0%
2e9xB02 1.20.58.1020 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 3.49e-01 71.6% 78.0%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 39.0 3.74e-01 81.1% 81.6%
5awwY00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.52 45.0 3.02e-01 100.0% 86.1%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.52 37.0 3.51e-01 89.5% 61.7%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 41.0 3.97e-01 85.3% 83.3%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 43.0 3.87e-01 94.7% 87.1%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 4.32e-01 93.7% 90.4%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4248629 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.88 40.0 5.95e-01 76.8% 95.6%
3841191 604.3.1.22 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF31030 0.70 42.0 4.29e-01 85.3% 62.2%
3947265 109.13.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › MgtE N-terminal domain-like › MgtE N-terminal domain-like › MgtE_N 0.66 48.0 4.31e-01 74.7% 86.2%
4020088 226.1.1.29 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › PF30957 0.65 46.0 3.64e-01 72.6% 58.4%
3636226 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 47.0 3.40e-01 85.3% 28.8%
4544593 7078.1.1.0 ↗ alpha superhelices › C-terminal domain of SidJ › C-terminal domain of SidJ › C-terminal domain of SidJ 0.64 39.0 3.65e-01 90.5% 48.7%
3276887 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 47.0 4.35e-01 76.8% 84.3%
4210088 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.63 43.0 3.01e-01 87.4% 21.3%
3298389 109.4.1.509 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.59 53.0 3.50e-01 98.9% 40.0%
4545867 601.2.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2 0.59 50.0 4.37e-01 89.5% 76.8%
3204982 109.4.1.576 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 0.59 52.0 2.95e-01 98.9% 96.8%
3511827 3691.1.1.0 ↗ alpha arrays › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain 0.59 44.0 4.56e-01 85.3% 84.4%
3707968 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 40.0 3.79e-01 90.5% 59.1%
3973074 601.2.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.57 48.0 4.35e-01 89.5% 88.8%
3432793 604.5.1.38 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › Gaa1 0.56 49.0 3.93e-01 100.0% 70.0%
3750890 109.3.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.56 50.0 3.81e-01 100.0% 96.1%
3258510 109.4.1.587 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C 0.56 49.0 3.31e-01 100.0% 50.5%
3964543 601.2.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2 0.55 45.0 4.18e-01 90.5% 82.4%
3288225 102.1.3.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Adenyl_transf 0.55 44.0 3.99e-01 91.6% 63.1%
3615907 3560.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.55 39.0 3.05e-01 73.7% 57.4%
3878295 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.54 47.0 4.04e-01 94.7% 59.3%
3591754 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 43.0 3.81e-01 87.4% 64.3%
3174765 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.53 46.0 3.56e-01 93.7% 56.6%
3187407 633.10.1.4 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › DUF3429 0.53 38.0 3.19e-01 74.7% 81.2%
3185205 109.4.1.1828 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOP1_M 0.53 47.0 3.39e-01 100.0% 64.0%
3607501 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.59e-01 100.0% 74.5%
3853104 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 46.0 3.26e-01 96.8% 67.6%
3663989 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.52 42.0 3.71e-01 86.3% 60.7%
3561267 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 46.0 3.18e-01 97.9% 64.4%
4658843 5039.1.1.1 ↗ alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 0.52 45.0 3.38e-01 100.0% 95.0%
4176312 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.51 38.0 3.81e-01 77.9% 88.0%
3173901 109.4.1.509 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.51 45.0 2.82e-01 97.9% 61.5%
3515853 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 42.0 3.00e-01 89.5% 48.2%
3248269 174.1.1.82 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7789 0.51 38.0 3.49e-01 90.5% 60.8%