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NC_048048.2__YP_009810249.1__HOU03_gp037__00037

Bact-Vir

NC_048048.2__YP_009810249.1__HOU03_gp037__00037

Identity

Accession:
NC_048048 ↗
Kingdom:
phage

Quality

53.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrSC

TaxID: 2283272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-95
PDB
D2 high residues 119-167
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 57.0 3.52e-01 100.0% 14.8%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 55.0 4.71e-01 100.0% 47.9%
6d2qA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.69 62.0 4.80e-01 100.0% 65.4%
3abbA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.62 50.0 2.96e-01 89.8% 41.3%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 34.0 3.02e-01 89.8% 38.9%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 42.0 3.07e-01 77.6% 43.2%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 41.0 3.41e-01 100.0% 39.8%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 36.0 3.16e-01 98.0% 45.1%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.79e-01 87.8% 88.2%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.54 43.0 3.66e-01 100.0% 78.6%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 45.0 3.16e-01 100.0% 93.4%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.53 45.0 3.84e-01 100.0% 81.2%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 44.0 3.56e-01 100.0% 48.0%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.53 41.0 4.03e-01 89.8% 83.6%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 37.0 3.29e-01 100.0% 51.4%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.52 35.0 3.35e-01 93.9% 59.3%
4ri6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 38.0 2.98e-01 100.0% 34.5%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 44.0 3.48e-01 100.0% 56.4%
4issA02 1.20.58.1700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.70e-01 100.0% 82.9%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 43.0 3.80e-01 100.0% 64.0%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.51 44.0 3.57e-01 100.0% 52.1%
2cruA01 1.10.8.140 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain 0.50 38.0 3.20e-01 79.6% 85.7%
2zjtA01 3.40.50.670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 3.09e-01 93.9% 37.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3197663 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.67 58.0 3.86e-01 100.0% 50.2%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 41.0 4.01e-01 100.0% 61.8%
3314239 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 47.0 4.47e-01 87.8% 75.0%
3907900 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.60 46.0 4.44e-01 89.8% 75.0%
3891361 4202.1.1.0 ↗ alpha duplicates or obligate multimers › Hermes dimerisation domain › Hermes dimerisation domain › Hermes dimerisation domain 0.60 46.0 4.39e-01 95.9% 73.3%
3240217 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.59 54.0 4.25e-01 100.0% 62.1%
3894364 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 42.0 4.15e-01 83.7% 74.5%
4945888 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.58 52.0 4.37e-01 100.0% 62.5%
5013811 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 47.0 4.57e-01 95.9% 98.2%
4387174 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 45.0 3.86e-01 100.0% 55.6%
3164823 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.55 49.0 3.16e-01 100.0% 50.9%
1824159 103.1.1.18 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Regnase_1_C 0.53 35.0 3.36e-01 100.0% 57.9%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.53 43.0 3.55e-01 100.0% 52.0%
3619546 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.53 44.0 4.04e-01 100.0% 72.3%
3220167 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 40.0 3.57e-01 83.7% 88.6%
3597633 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.51 38.0 2.57e-01 100.0% 36.3%