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NC_048048.2__YP_009810434.1__HOU03_gp463__00222

Bact-Vir

NC_048048.2__YP_009810434.1__HOU03_gp463__00222

Identity

Accession:
NC_048048 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrSC

TaxID: 2283272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-11_81-124
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.80 56.0 4.80e-01 72.7% 48.8%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.79 64.0 4.88e-01 89.1% 44.8%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.78 67.0 5.25e-01 94.5% 64.9%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.78 66.0 4.89e-01 92.7% 44.4%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.76 63.0 4.69e-01 90.9% 46.3%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.75 62.0 4.45e-01 89.1% 68.0%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.75 66.0 4.79e-01 100.0% 64.7%
2wmfA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.73 57.0 4.39e-01 85.5% 96.8%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.73 63.0 4.94e-01 98.2% 47.5%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.73 59.0 4.49e-01 92.7% 38.6%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.72 62.0 4.64e-01 98.2% 61.9%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.71 60.0 4.41e-01 92.7% 68.5%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.71 59.0 4.65e-01 94.5% 59.7%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.71 57.0 5.57e-01 89.1% 86.9%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.70 53.0 3.73e-01 81.8% 81.4%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 53.0 3.16e-01 83.6% 30.0%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.68 51.0 4.47e-01 85.5% 54.2%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 55.0 3.86e-01 92.7% 39.9%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.67 48.0 3.40e-01 76.4% 26.0%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.67 49.0 4.27e-01 80.0% 55.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 57.0 4.31e-01 100.0% 70.0%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.66 52.0 3.90e-01 90.9% 72.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 46.0 3.73e-01 80.0% 41.7%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 47.0 3.37e-01 83.6% 62.4%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 50.0 3.10e-01 94.5% 22.5%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.61 51.0 4.16e-01 94.5% 49.5%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 47.0 3.09e-01 85.5% 47.1%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.73e-01 94.5% 69.6%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 49.0 2.94e-01 94.5% 98.4%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.60 46.0 4.65e-01 83.6% 98.1%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.73e-01 94.5% 75.4%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.96e-01 89.1% 78.7%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.59 50.0 3.76e-01 94.5% 79.3%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.58 45.0 3.24e-01 85.5% 47.9%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 44.0 3.51e-01 89.1% 92.3%
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.56 42.0 3.67e-01 89.1% 64.3%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 46.0 3.07e-01 100.0% 58.5%
1u9tA01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 41.0 3.07e-01 89.1% 50.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3233005 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.83 66.0 4.19e-01 90.9% 18.4%
3219544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 65.0 4.01e-01 92.7% 16.4%
4964031 7089.1.1.7 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 0.78 64.0 5.90e-01 90.9% 85.7%
3219318 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.77 65.0 4.02e-01 92.7% 18.7%
3242741 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.76 61.0 3.90e-01 90.9% 18.6%
3218903 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.75 59.0 3.92e-01 89.1% 22.4%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 63.0 3.85e-01 92.7% 16.4%
3233897 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 62.0 4.71e-01 90.9% 40.8%
3546306 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.74 64.0 5.35e-01 98.2% 58.9%
1144736 12.2.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Glyco_hydro_98C 0.73 57.0 4.07e-01 85.5% 97.0%
3597007 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.73 59.0 4.16e-01 89.1% 36.4%
3916950 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.73 63.0 4.03e-01 100.0% 78.6%
3529940 292.2.1.11 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34_2nd 0.72 59.0 4.93e-01 90.9% 65.6%
1309460 3338.1.1.1 ↗ a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm 0.72 61.0 4.59e-01 98.2% 60.1%
3224579 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 60.0 3.72e-01 90.9% 15.9%
5011042 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.71 59.0 4.52e-01 94.5% 48.5%
4255411 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.71 51.0 4.13e-01 78.2% 63.6%
1567525 3842.1.1.1 ↗ a+b two layers › Uncharacterized protein Rv3902c › Uncharacterized protein Rv3902c › Uncharacterized protein Rv3902c › Imm61 0.70 60.0 4.27e-01 98.2% 69.1%
3238369 12.1.1.88 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 0.70 56.0 5.74e-01 89.1% 98.1%
5076987 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.70 59.0 3.69e-01 96.4% 36.8%
3215166 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.69 59.0 4.97e-01 96.4% 57.9%
3701925 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.67 56.0 4.45e-01 96.4% 61.7%
3741655 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.29e-01 92.7% 28.0%
3793430 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 53.0 4.50e-01 94.5% 71.6%
3448363 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 51.0 3.39e-01 92.7% 63.9%
None — 0.61 48.0 3.20e-01 92.7% 63.0%
4202676 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.58 47.0 3.13e-01 98.2% 62.9%
3605569 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.58 48.0 3.06e-01 100.0% 51.4%
4281376 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.56 44.0 2.87e-01 96.4% 57.8%
None — 0.55 43.0 2.89e-01 98.2% 64.8%
D2 medium residues 12-80
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 48.0 3.91e-01 91.3% 61.0%
1kskA02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.60 49.0 3.76e-01 100.0% 38.3%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 49.0 4.85e-01 95.7% 98.6%
1vjwA00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 4.22e-01 100.0% 91.5%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.56 47.0 4.16e-01 100.0% 83.3%
4id8A00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 4.27e-01 100.0% 89.2%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 3.18e-01 100.0% 30.8%
2k5tA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.48e-01 89.9% 48.4%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.52 43.0 4.07e-01 97.1% 98.9%
7k98B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 42.0 3.01e-01 92.8% 86.1%
6kzdA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 36.0 2.67e-01 92.8% 28.3%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 42.0 3.98e-01 97.1% 84.5%
4uhtA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.68e-01 94.2% 82.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590655 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.65 54.0 4.66e-01 94.2% 60.9%
4460365 205.1.1.33 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10 0.59 43.0 4.29e-01 100.0% 74.7%
3262829 304.36.1.2 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.59 49.0 4.30e-01 92.8% 61.0%
3276262 304.36.1.2 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.55 46.0 4.10e-01 97.1% 75.2%
4957085 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 38.0 3.91e-01 100.0% 80.0%
5047612 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.55 46.0 4.52e-01 97.1% 89.3%
4263386 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.52 43.0 3.44e-01 98.6% 96.2%
4994964 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.52 40.0 2.78e-01 89.9% 42.2%
4558880 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.51 41.0 2.65e-01 98.6% 48.1%
3670690 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 41.0 2.70e-01 98.6% 39.2%