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NC_048048.2__YP_009810507.1__HOU03_gp391__00294

Bact-Vir

NC_048048.2__YP_009810507.1__HOU03_gp391__00294

Identity

Accession:
NC_048048 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrSC

TaxID: 2283272

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-172
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00038__D86-218
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13328.13 best HD_4 31.5 2.00e-07 81.0% 51.9%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqwA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.89 83.0 8.18e-01 97.0% 96.6%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.88 83.0 8.01e-01 99.4% 98.4%
1vj7B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.86 75.0 7.42e-01 98.8% 87.9%
7smgD00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.85 68.0 7.39e-01 85.7% 97.9%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 33.0 4.39e-01 95.8% 95.6%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.61 37.0 4.16e-01 85.7% 77.7%
2yinA01 1.25.40.410 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A 0.58 36.0 4.01e-01 93.5% 79.7%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 35.0 4.03e-01 98.8% 83.2%
1e3mB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 30.0 3.19e-01 78.0% 53.9%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 40.0 4.38e-01 88.1% 87.0%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 41.0 4.47e-01 96.4% 91.5%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 38.0 4.30e-01 98.8% 92.9%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 40.0 4.22e-01 74.4% 85.9%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 29.0 3.72e-01 97.0% 89.6%
3ro3A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 41.0 4.22e-01 99.4% 82.4%
3lpzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 3.34e-01 100.0% 42.7%
2vyiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 36.0 4.00e-01 98.2% 88.3%
2c2lA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 37.0 4.11e-01 99.4% 89.5%
2yhcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 39.0 3.72e-01 100.0% 62.2%
3sz7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 38.0 3.97e-01 99.4% 82.8%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.52 35.0 4.04e-01 76.8% 100.0%
2fulB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 42.0 4.32e-01 97.6% 91.8%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.51 36.0 3.60e-01 70.2% 92.4%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.51 30.0 3.64e-01 86.3% 90.7%
4p3fA00 1.10.3450.40 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain 0.51 39.0 3.79e-01 81.0% 96.4%
1k8kG00 1.25.40.190 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 0.50 34.0 3.71e-01 89.9% 82.0%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.50 39.0 4.16e-01 97.0% 92.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3584809 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.91 85.0 8.08e-01 97.0% 89.1%
4929438 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.90 83.0 7.92e-01 95.2% 88.4%
4606782 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.90 84.0 8.31e-01 96.4% 93.7%
3265073 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.90 86.0 8.05e-01 100.0% 88.5%
3668020 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.86 81.0 7.46e-01 98.8% 87.8%
3386161 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.85 78.0 7.22e-01 96.4% 86.8%
3683167 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.82 77.0 7.39e-01 98.2% 91.6%
3964980 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.82 75.0 7.05e-01 96.4% 90.5%
3927226 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.82 75.0 7.65e-01 96.4% 100.0%
1503542 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.81 69.0 7.19e-01 88.7% 100.0%
4215090 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.81 76.0 7.05e-01 99.4% 86.8%
3513291 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.80 74.0 6.90e-01 96.4% 87.0%
3961396 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.78 74.0 7.04e-01 100.0% 86.8%
4600410 131.1.1.24 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.74 66.0 5.85e-01 95.2% 76.6%
3689164 219.3.1.1 ↗ a+b complex topology › Cysteine proteinases-like › AnkH, inserted middle domain › AnkH, inserted middle domain › DUF6606 0.65 56.0 4.35e-01 89.9% 94.8%
5038604 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.65 58.0 5.71e-01 95.2% 95.0%
5047253 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 44.0 3.72e-01 81.5% 49.5%
3885741 109.4.1.1640 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29127, PF29567 0.56 42.0 3.26e-01 77.4% 48.2%
4022709 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 4.20e-01 86.9% 92.2%
3722112 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.54 45.0 3.23e-01 88.1% 49.8%
3263316 109.4.1.661 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT11 0.53 40.0 3.99e-01 97.6% 74.3%
3730381 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 49.0 3.52e-01 100.0% 42.8%
2818706 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.53 47.0 4.25e-01 97.0% 84.3%
3236240 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.34e-01 98.8% 43.7%
3728187 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.52 48.0 3.51e-01 100.0% 45.8%
3465926 109.4.1.359 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.51 44.0 3.91e-01 92.9% 80.8%
4023646 174.1.1.88 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7641 0.51 33.0 3.74e-01 81.5% 86.4%
3722193 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 46.0 4.47e-01 99.4% 88.6%
1719259 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 46.0 4.27e-01 97.6% 83.1%
3193510 109.4.1.554 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Neurochondrin 0.51 46.0 3.06e-01 98.8% 32.2%
3701155 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.51 39.0 3.62e-01 81.5% 87.1%
3500852 4266.3.1.1 ↗ alpha bundles › Hyaluronidase domain-like › FLJ32549 domain-like › FLJ32549 domain-like › C12orf66_like 0.51 39.0 3.27e-01 80.4% 69.7%
3833669 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 45.0 2.64e-01 98.2% 15.0%
D2 medium residues 213-266
PDB
Domain cluster: rep: OP620778.1__WGN97701.1__X__00287__D43-95